We present a major update of the HOCOMOCO collection that consists of patterns
describing DNA binding specificities for human and mouse transcription factors. In this …

The current version of the Gene Transcription Regulation Database (GTRD; http://gtrd.
biouml. org) contains information about:(i) transcription factor binding sites (TFBSs) and …

We present a major update of the HOCOMOCO collection that provides DNA binding
specificity patterns of 949 human transcription factors and 720 mouse orthologs. To make …

The transcription factor Blimp-1 is necessary for the generation of plasma cells. Here we
studied its functions in plasmablast differentiation by identifying regulated Blimp-1 target …

Abstract GTRD—Gene Transcription Regulation Database (http://gtrd. biouml. org)—is a
database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for …

Cell type-specific master transcription factors (TFs) play vital roles in defining cell identity
and function. However, the roles ubiquitous factors play in the specification of cell identity …

Assimilation of nitrogen is an essential process in bacteria. The nitrogen regulation stress
response is an adaptive mechanism used by nitrogen-starved Escherichia coli to scavenge …

The DNA-binding AT-rich interactive domain (ARID) exists in a wide range of proteins
throughout eukaryotic kingdoms. ARID domain-containing proteins are involved in manifold …

Divergent transcription, in which reverse-oriented transcripts occur upstream of eukaryotic
promoters in regions devoid of annotated genes, has been suggested to be a general …

In this study, we demonstrate that the lack of retinoic acid-related orphan receptor (ROR) γ or
α expression in mice significantly reduced the peak expression level of Cry1, Bmal1, E4bp4 …