Single B cell technologies for monoclonal antibody discovery

A Pedrioli, A Oxenius - Trends in immunology, 2021 - cell.com
Monoclonal antibodies (mAbs) are often selected from antigen-specific single B cells
derived from different hosts, which are notably short-lived in ex vivo culture conditions and …

Techniques to study antigen-specific B cell responses

J Boonyaratanakornkit, JJ Taylor - Frontiers in immunology, 2019 - frontiersin.org
Antibodies against foreign antigens are a critical component of the overall immune response
and can facilitate pathogen clearance during a primary infection and also protect against …

Functional interrogation and mining of natively paired human VH:VL antibody repertoires

B Wang, BJ DeKosky, MR Timm, J Lee… - Nature …, 2018 - nature.com
We present a technology to screen millions of B cells for natively paired human antibody
repertoires. Libraries of natively paired, variable region heavy and light (VH: VL) amplicons …

Advanced methodologies in high-throughput sequencing of immune repertoires

S Friedensohn, TA Khan, ST Reddy - Trends in biotechnology, 2017 - cell.com
In recent years, major efforts have been made to develop sophisticated experimental and
bioinformatic workflows for sequencing adaptive immune repertoires. The immunological …

Integrating high‐throughput screening and sequencing for monoclonal antibody discovery and engineering

C Parola, D Neumeier, ST Reddy - Immunology, 2018 - Wiley Online Library
Monoclonal antibody discovery and engineering is a field that has traditionally been
dominated by high‐throughput screening platforms (eg hybridomas and surface display). In …

Accurate and predictive antibody repertoire profiling by molecular amplification fingerprinting

TA Khan, S Friedensohn, AR Gorter de Vries… - Science …, 2016 - science.org
High-throughput antibody repertoire sequencing (Ig-seq) provides quantitative molecular
information on humoral immunity. However, Ig-seq is compromised by biases and errors …

Neglected filoviruses

R Burk, L Bollinger, JC Johnson, J Wada… - FEMS microbiology …, 2016 - academic.oup.com
Eight viruses are currently assigned to the family Filoviridae. Marburg virus, Sudan virus
and, in particular, Ebola virus have received the most attention both by researchers and the …

Deep sequencing methods for protein engineering and design

EE Wrenbeck, MS Faber, TA Whitehead - Current opinion in structural …, 2017 - Elsevier
Highlights•Deep sequencing permits examination of local protein fitness landscapes.•NGS
aids in engineering affinity and specificity for protein molecular recognition.•Application to …

How repertoire data are changing antibody science

C Marks, CM Deane - Journal of Biological Chemistry, 2020 - ASBMB
Antibodies are vital proteins of the immune system that recognize potentially harmful
molecules and initiate their removal. Mammals can efficiently create vast numbers of …

[HTML][HTML] VDJServer: a cloud-based analysis portal and data commons for immune repertoire sequences and rearrangements

S Christley, W Scarborough, E Salinas… - Frontiers in …, 2018 - frontiersin.org
Background Recent technological advances in immune repertoire sequencing have created
tremendous potential for advancing our understanding of adaptive immune response …