[PDF][PDF] Molecular recognition of DNA by small molecules

PB Dervan - Bioorganic & medicinal chemistry, 2001 - dervan.caltech.edu
Chemists, like artists, are able to construct new threedimensional objects, molecules and
materials that exist only in the mind of a person. I became interested in creating novel …

DNA minor-groove recognition by small molecules

S Neidle - Natural product reports, 2001 - pubs.rsc.org
DNA has for many years been the traditional target for chemotherapeutic intervention1 in
human cancers, especially for those where high proliferation rates of some tumour cell types …

Sequence-based design of bioactive small molecules that target precursor microRNAs

SP Velagapudi, SM Gallo, MD Disney - Nature chemical biology, 2014 - nature.com
Oligonucleotides are designed to target RNA using base pairing rules, but they can be
hampered by poor cellular delivery and nonspecific stimulation of the immune system. Small …

Inforna 2.0: a platform for the sequence-based design of small molecules targeting structured RNAs

MD Disney, AM Winkelsas, SP Velagapudi… - ACS chemical …, 2016 - ACS Publications
The development of small molecules that target RNA is challenging yet, if successful, could
advance the development of chemical probes to study RNA function or precision …

Energetics of drug–DNA interactions

JB Chaires - Biopolymers: Original Research on Biomolecules, 1997 - Wiley Online Library
Understanding the thermodynamics of drug binding to DNA is of both practical and
fundamental interest. The practical interest lies in the contribution that thermodynamics can …

Recognition of the four Watson–Crick base pairs in the DNA minor groove by synthetic ligands

S White, JW Szewczyk, JM Turner, EE Baird… - Nature, 1998 - nature.com
The design of synthetic ligands that read the information stored in the DNA double helix has
been a long-standing goal at the interface of chemistry and biology,,,,. Cell-permeable small …

Drug—DNA interactions

JB Chaires - Current opinion in structural biology, 1998 - Elsevier
Significant progress has been made over the past few years in studies of drug—DNA
interactions. Structure-based design strategies have yielded new DNA-binding agents with …

Structural basis for G• C recognition in the DNA minor groove

CL Kielkopf, EE Baird, PB Dervan, DC Rees - Nature structural biology, 1998 - nature.com
Small molecules that target specific DNA sequences offer a potentially general approach for
the regulation of gene expression. Pyrrole–imidazole polyamides represent the only class of …

On the pairing rules for recognition in the minor groove of DNA by pyrrole-imidazole polyamides

S White, EE Baird, PB Dervan - Chemistry & biology, 1997 - cell.com
Background: Cell-permeable small molecules that target predetermined DNA sequences
with high affinity and specificity have the potential to control gene expression. A binary code …

Aliphatic/aromatic amino acid pairings for polyamide recognition in the minor groove of DNA

JM Turner, SE Swalley, EE Baird… - Journal of the American …, 1998 - ACS Publications
Selective placement of an aliphatic β-alanine (β) residue paired side-by-side with either a
pyrrole (Py) or imidazole (Im) aromatic amino acid is found to compensate for sequence …