Contributions of histone variants in nucleosome structure and function

H Kurumizaka, T Kujirai, Y Takizawa - Journal of molecular biology, 2021 - Elsevier
Chromatin compacts genomic DNA in eukaryotes. The primary chromatin unit is the
nucleosome core particle, composed of four pairs of the core histones, H2A, H2B, H3, and …

Structural diversity of the nucleosome

M Koyama, H Kurumizaka - The journal of biochemistry, 2018 - academic.oup.com
In eukaryotes, genomic DNA is compacted in chromatin, which generally suppresses
transcription, replication, repair, and recombination. The fundamental unit of chromatin is the …

Histone divergence in trypanosomes results in unique alterations to nucleosome structure

G Deák, H Wapenaar, G Sandoval, R Chen… - Nucleic Acids …, 2023 - academic.oup.com
Eukaryotes have a multitude of diverse mechanisms for organising and using their
genomes, but the histones that make up chromatin are highly conserved. Unusually …

Molecular and structural basis of the chromatin remodeling activity by Arabidopsis DDM1

A Osakabe, Y Takizawa, N Horikoshi… - Nature …, 2024 - nature.com
The histone H2A variant H2A. W occupies transposons and thus prevents access to them in
Arabidopsis thaliana. H2A. W is deposited by the chromatin remodeler DDM1, which also …

Apolipoprotein E4 inhibits autophagy gene products through direct, specific binding to CLEAR motifs

PA Parcon, M Balasubramaniam, S Ayyadevara… - Alzheimer's & …, 2018 - Elsevier
Abstract Introduction Alzheimer apolipoprotein E (APOE) ɛ4/ɛ4 carriers have earlier
disease onset and more protein aggregates than patients with other APOE genotypes …

Cryo-EM structures of centromeric tri-nucleosomes containing a central CENP-A nucleosome

Y Takizawa, CH Ho, H Tachiwana, H Matsunami… - Structure, 2020 - cell.com
The histone H3 variant CENP-A is a crucial epigenetic marker for centromere specification.
CENP-A forms a characteristic nucleosome and dictates the higher-order configuration of …

Distinct roles of histone H3 and H2A tails in nucleosome stability

Z Li, H Kono - Scientific reports, 2016 - nature.com
Nucleosome breathing potentially increases the DNA exposure, which in turn recruits DNA-
binding protein and regulates gene transcription. Numerous studies have shown the critical …

Intrinsic elasticity of nucleosomes is encoded by histone variants and calibrated by their binding partners

DP Melters, M Pitman, T Rakshit… - Proceedings of the …, 2019 - National Acad Sciences
Histone variants fine-tune transcription, replication, DNA damage repair, and faithful
chromosome segregation. Whether and how nucleosome variants encode unique …

Molecular mechanism of spontaneous nucleosome unraveling

D Winogradoff, A Aksimentiev - Journal of molecular biology, 2019 - Elsevier
Meters of DNA wrap around histone proteins to form nucleosomes and fit inside the micron-
diameter nucleus. For the genetic information encoded in the DNA to become available for …

Cryo-EM structure of the nucleosome core particle containing Giardia lamblia histones

S Sato, Y Takizawa, F Hoshikawa… - Nucleic Acids …, 2021 - academic.oup.com
Giardia lamblia is a pathogenic unicellular eukaryotic parasite that causes giardiasis. Its
genome encodes the canonical histones H2A, H2B, H3, and H4, which share low amino …