Venn diagrams in bioinformatics

A Jia, L Xu, Y Wang - Briefings in bioinformatics, 2021 - academic.oup.com
Venn diagrams are widely used tools for graphical depiction of the unions, intersections and
distinctions among multiple datasets, and a large number of programs have been developed …

Mitochondria, the gut microbiome and ROS

JWO Ballard, SG Towarnicki - Cellular signalling, 2020 - Elsevier
In this review, we discuss the connections between mitochondria and the gut microbiome
provided by reactive oxygen species (ROS). We examine the mitochondrion as an …

The genome of the freshwater water flea Daphnia magna: A potential use for freshwater molecular ecotoxicology

BY Lee, BS Choi, MS Kim, JC Park, CB Jeong, J Han… - Aquatic Toxicology, 2019 - Elsevier
The water flea Daphnia magna is a small planktonic cladoceran. D. magna has been used
as a model species for ecotoxicology, as it is sensitive to environmental stressors and …

Inheritance through the cytoplasm

MF Camus, B Alexander-Lawrie, J Sharbrough… - Heredity, 2022 - nature.com
Most heritable information in eukaryotic cells is encoded in the nuclear genome, with
inheritance patterns following classic Mendelian segregation. Genomes residing in the …

Recent advances in crustacean genomics and their potential application in aquaculture

J Yuan, Y Yu, X Zhang, S Li, J Xiang… - Reviews in …, 2023 - Wiley Online Library
Genomic resources are increasingly being used to improve the production efficiency and
profitability of aquaculture. Crustaceans are a large group of invertebrates that …

Mutation pressure, drift, and the pace of molecular coevolution

M Lynch - Proceedings of the National Academy of …, 2023 - National Acad Sciences
Most aspects of the molecular biology of cells involve tightly coordinated intermolecular
interactions requiring specific recognition at the nucleotide and/or amino acid levels. This …

Assessing the fitness consequences of mitonuclear interactions in natural populations

GE Hill, JC Havird, DB Sloan, RS Burton… - Biological …, 2019 - Wiley Online Library
Metazoans exist only with a continuous and rich supply of chemical energy from oxidative
phosphorylation in mitochondria. The oxidative phosphorylation machinery that mediates …

Carotenoid ornaments and the spandrels of physiology: a critique of theory to explain condition dependency

GE Hill, RJ Weaver, MJ Powers - Biological Reviews, 2023 - Wiley Online Library
Even as numerous studies have documented that the red and yellow coloration resulting
from the deposition of carotenoids serves as an honest signal of condition, the evolution of …

Mitochondrial genome diversity across the subphylum Saccharomycotina

JF Wolters, AL LaBella, DA Opulente, A Rokas… - Frontiers in …, 2023 - frontiersin.org
Introduction Eukaryotic life depends on the functional elements encoded by both the nuclear
genome and organellar genomes, such as those contained within the mitochondria. The …

Strong selective effects of mitochondrial DNA on the nuclear genome

TM Healy, RS Burton - … of the National Academy of Sciences, 2020 - National Acad Sciences
Oxidative phosphorylation, the primary source of cellular energy in eukaryotes, requires
gene products encoded in both the nuclear and mitochondrial genomes. As a result …