The AAA+ superfamily: a review of the structural and mechanistic principles of these molecular machines

YA Khan, KI White, AT Brunger - Critical reviews in biochemistry …, 2022 - Taylor & Francis
ATPases associated with diverse cellular activities (AAA+ proteins) are a superfamily of
proteins found throughout all domains of life. The hallmark of this family is a conserved …

[HTML][HTML] INO80 and SWR1 complexes: the non-identical twins of chromatin remodelling

O Willhoft, DB Wigley - Current Opinion in Structural Biology, 2020 - Elsevier
The INO80 family of chromatin remodellers are multisubunit complexes that perform a
variety of tasks on nucleosomes. Family members are built around a heterohexamer of RuvB …

Structural basis for ATP-dependent chromatin remodelling by the INO80 complex

S Eustermann, K Schall, D Kostrewa, K Lakomek… - Nature, 2018 - nature.com
In the eukaryotic nucleus, DNA is packaged in the form of nucleosomes, each of which
comprises about 147 base pairs of DNA wrapped around a histone protein octamer. The …

Structure and regulation of the human INO80–nucleosome complex

R Ayala, O Willhoft, RJ Aramayo, M Wilkinson… - Nature, 2018 - nature.com
Access to DNA within nucleosomes is required for a variety of processes in cells including
transcription, replication and repair. Consequently, cells encode multiple systems that …

Structural mechanism of extranucleosomal DNA readout by the INO80 complex

F Kunert, FJ Metzner, J Jung, M Höpfler, S Woike… - Science …, 2022 - science.org
The nucleosomal landscape of chromatin depends on the concerted action of chromatin
remodelers. The INO80 remodeler specifically places nucleosomes at the boundary of gene …

Structure and dynamics of the yeast SWR1-nucleosome complex

O Willhoft, M Ghoneim, CL Lin, EYD Chua, M Wilkinson… - Science, 2018 - science.org
INTRODUCTION Canonical nucleosomes contain two copies of each of four histone
proteins: H2A, H2B, H3, and H4. However, variants of these histones can be inserted by …

A simple cross-linking/mass spectrometry workflow for studying system-wide protein interactions

M Götze, C Iacobucci, CH Ihling, A Sinz - Analytical chemistry, 2019 - ACS Publications
We present a cross-linking/mass spectrometry workflow for performing proteome-wide cross-
linking analyses within 1 week. The workflow is based on the commercially available mass …

Structure of the human TIP60 complex

K Chen, L Wang, Z Yu, J Yu, Y Ren, Q Wang… - Nature …, 2024 - nature.com
Mammalian TIP60 is a multi-functional enzyme with histone acetylation and histone dimer
exchange activities. It plays roles in diverse cellular processes including transcription, DNA …

Epigenetic Control of Translation Checkpoint and Tumor Progression via RUVBL1‐EEF1A1 Axis

M Li, L Yang, AKN Chan, SP Pokharel, Q Liu… - Advanced …, 2023 - Wiley Online Library
Epigenetic dysregulation is reported in multiple cancers including Ewing sarcoma (EwS).
However, the epigenetic networks underlying the maintenance of oncogenic signaling and …

The nuclear actin-containing Arp8 module is a linker DNA sensor driving INO80 chromatin remodeling

KR Knoll, S Eustermann, V Niebauer… - Nature structural & …, 2018 - nature.com
Nuclear actin (N-actin) and actin-related proteins (Arps) are critical components of several
chromatin modulating complexes, including the chromatin remodeler INO80, but their …