Adaptive immunity programmes in breast cancer

FS Varn, DW Mullins, H Arias‐Pulido, S Fiering… - …, 2017 - Wiley Online Library
The role of the immune system in shaping cancer development and patient prognosis has
recently become an area of intense focus in industry and academia. Harnessing the …

MOBCdb: a comprehensive database integrating multi-omics data on breast cancer for precision medicine

B Xie, Z Yuan, Y Yang, Z Sun, S Zhou… - Breast cancer research and …, 2018 - Springer
Background Breast cancer is one of the most frequently diagnosed cancers among women
worldwide, characterized by diverse biological heterogeneity. It is well known that complex …

Therapeutically targeting tumor microenvironment–mediated drug resistance in estrogen receptor–positive breast cancer

K Shee, W Yang, JW Hinds, RA Hampsch… - Journal of Experimental …, 2018 - rupress.org
Drug resistance to approved systemic therapies in estrogen receptor–positive (ER+) breast
cancer remains common. We hypothesized that factors present in the human tumor …

[HTML][HTML] Using hidden Markov model to predict recurrence of breast cancer based on sequential patterns in gene expression profiles

M Momenzadeh, M Sehhati, H Rabbani - Journal of Biomedical Informatics, 2020 - Elsevier
A new approach is presented to predict breast cancer recurrence through gene expression
profiles using hidden Markov models (HMM). In this regard, 322 genes were selected from …

Comparison of multiple transcriptomes exposes unified and divergent features of quiescent and activated skeletal muscle stem cells

N Pietrosemoli, S Mella, S Yennek, MB Baghdadi… - Skeletal muscle, 2017 - Springer
Background Skeletal muscle satellite (stem) cells are quiescent in adult mice and can
undergo multiple rounds of proliferation and self-renewal following muscle injury. Several …

miRNA in a multiomic context for diagnosis, treatment monitoring and personalized management of metastatic breast cancer

P Zubor, P Kubatka, Z Dankova, A Gondova… - Future …, 2018 - Taylor & Francis
Metastatic breast cancer is characterized by aggressive spreading to distant organs. Despite
huge multilevel research, there are still several important challenges that have to be clarified …

A network medicine approach to build a comprehensive atlas for the prognosis of human cancer

F Zhang, C Ren, KK Lau, Z Zheng, G Lu… - Briefings in …, 2016 - academic.oup.com
The Cancer Genome Atlas project has generated multi-dimensional and highly integrated
genomic data from a large number of patient samples with detailed clinical records across …

[HTML][HTML] Cytokine sensitivity screening highlights BMP4 pathway signaling as a therapeutic opportunity in ER+ breast cancer

K Shee, A Jiang, FS Varn, S Liu, NA Traphagen… - The FASEB …, 2019 - ncbi.nlm.nih.gov
Despite the success of approved systemic therapies for estrogen receptor α (ER)-positive
breast cancer, drug resistance remains common. We hypothesized that secreted factors from …

Ranking of survival-related gene sets through integration of single-sample gene set enrichment and survival analysis

M Špendl, J Kokošar, E Praznik, L Ausec… - … Conference on Artificial …, 2023 - Springer
The onset and progression of a disease are often associated with changes in the expression
of groups of genes from a particular molecular pathway. Gene set enrichment analysis has …

[HTML][HTML] Aberrant expression of epithelial leucine-rich repeat containing G protein–coupled receptor 5–positive cells in the eutopic endometrium in endometriosis and …

J Vallvé-Juanico, E Suárez-Salvador, J Castellví… - Fertility and …, 2017 - Elsevier
Objective To characterize leucine-rich repeat containing G protein-coupled receptor 5–
positive (LGR5+) cells from the endometrium of women with endometriosis. Design …