Function of alternative splicing

O Kelemen, P Convertini, Z Zhang, Y Wen, M Shen… - Gene, 2013 - Elsevier
Almost all polymerase II transcripts undergo alternative pre-mRNA splicing. Here, we review
the functions of alternative splicing events that have been experimentally determined. The …

Charting histone modifications and the functional organization of mammalian genomes

VW Zhou, A Goren, BE Bernstein - Nature Reviews Genetics, 2011 - nature.com
A succession of technological advances over the past decade have enabled researchers to
chart maps of histone modifications and related chromatin structures with increasing …

Widespread RNA binding by chromatin-associated proteins

DG Hendrickson, DR Kelley, D Tenen, B Bernstein… - Genome biology, 2016 - Springer
Background Recent evidence suggests that RNA interaction can regulate the activity and
localization of chromatin-associated proteins. However, it is unknown if these observations …

Differential GC content between exons and introns establishes distinct strategies of splice-site recognition

M Amit, M Donyo, D Hollander, A Goren, E Kim… - Cell reports, 2012 - cell.com
During evolution segments of homeothermic genomes underwent a GC content increase.
Our analyses reveal that two exon-intron architectures have evolved from an ancestral state …

DNA methylation directs microRNA biogenesis in mammalian cells

O Glaich, S Parikh, RE Bell, K Mekahel… - Nature …, 2019 - nature.com
MicroRNA (miRNA) biogenesis initiates co-transcriptionally, but how the Microprocessor
machinery pinpoints the locations of short precursor miRNA sequences within long flanking …

Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons

V Saint-André, E Batsché, C Rachez… - Nature structural & …, 2011 - nature.com
Pre-messenger RNAs (pre-mRNAs) maturation is initiated cotranscriptionally. It is therefore
conceivable that chromatin-borne information participates in alternative splicing. Here we …

Human histone H1 variants impact splicing outcome by controlling RNA polymerase II elongation

C Pascal, J Zonszain, O Hameiri, C Gargi-Levi… - Molecular Cell, 2023 - cell.com
Histones shape chromatin structure and the epigenetic landscape. H1, the most diverse
histone in the human genome, has 11 variants. Due to the high structural similarity between …

Reprogramming cellular events by poly (ADP-ribose)-binding proteins

J Krietsch, M Rouleau, É Pic, C Ethier… - Molecular aspects of …, 2013 - Elsevier
Poly (ADP-ribosyl) ation is a posttranslational modification catalyzed by the poly (ADP-
ribose) polymerases (PARPs). These enzymes covalently modify glutamic, aspartic and …

PARP activation regulates the RNA-binding protein NONO in the DNA damage response to DNA double-strand breaks

J Krietsch, MC Caron, JP Gagne, C Ethier… - Nucleic acids …, 2012 - academic.oup.com
After the generation of DNA double-strand breaks (DSBs), poly (ADP-ribose) polymerase-1
(PARP-1) is one of the first proteins to be recruited and activated through its binding to the …

Prediction of single‐nucleotide substitutions that result in exon skipping: identification of a splicing silencer in BRCA1 exon 6

M Raponi, J Kralovicova, E Copson, P Divina… - Human …, 2011 - Wiley Online Library
Missense, nonsense, and translationally silent mutations can inactivate genes by altering
the inclusion of mutant exons in mRNA, but their overall frequency among disease‐causing …