Integrated metabolomic–genomic workflows accelerate microbial natural product discovery

NE Avalon, AE Murray, BJ Baker - Analytical chemistry, 2022 - ACS Publications
The pairing of analytical chemistry with genomic techniques represents a new wave in
natural product chemistry. With an increase in the availability of sequencing and assembly of …

Beyond the approved: target sites and inhibitors of bacterial RNA polymerase from bacteria and fungi

SH Kirsch, FPJ Haeckl, R Müller - Natural Product Reports, 2022 - pubs.rsc.org
Covering: 2016 to 2022 RNA polymerase (RNAP) is the central enzyme in bacterial gene
expression representing an attractive and validated target for antibiotics. Two well-known …

Correlative metabologenomics of 110 fungi reveals metabolite–gene cluster pairs

LK Caesar, FA Butun, MT Robey, NJ Ayon… - Nature chemical …, 2023 - nature.com
Natural products research increasingly applies-omics technologies to guide molecular
discovery. While the combined analysis of genomic and metabolomic datasets has proved …

Streptomyces learnhanii sp. nov., unveiling a Mangrove-Derived Novel “Modern Actinobacteria” in Malaysia

JWF Law, V Letchumanan… - … In Microbes & …, 2023 - journals.hh-publisher.com
Streptomyces learnhanii sp. nov. MUM 203J T was isolated from Malaysia mangrove soil.
This Gram-positive bacterium produces pale greenish-yellow aerial and greyish-yellow …

Biosynthetic gene cluster profiling from North Java Sea Virgibacillus salarius reveals hidden potential metabolites

OK Radjasa, R Steven, Z Humaira, FM Dwivany… - Scientific Reports, 2023 - nature.com
Abstract Virgibacillus salarius 19. PP. SC1. 6 is a coral symbiont isolated from Indonesia's
North Java Sea; it has the ability to produce secondary metabolites that provide survival …

[HTML][HTML] Synthetic biology in Indonesia: Potential and projection in a country with mega biodiversity

I Sanka, AB Kusuma, F Martha, A Hendrawan… - Biotechnology …, 2023 - Elsevier
Synthetic biology has gained many interest around the globe in the last two decades, not
only due to its rapid development but also the potential to provide addressable solutions …

Genome features and secondary metabolite potential of the marine symbiont Streptomyces sp. RS2

R Nofiani, Rudiyansyah, P Ardiningsih, Rizky… - Archives of …, 2023 - Springer
Streptomyces sp. RS2 was isolated from an unidentified sponge collected around Randayan
Island, Indonesia. The genome of Streptomyces sp. RS2 consists of a linear chromosome of …

ActinoBase: tools and protocols for researchers working on Streptomyces and other filamentous actinobacteria

MA Feeney, JT Newitt, E Addington… - Microbial …, 2022 - microbiologyresearch.org
Actinobacteria is an ancient phylum of Gram-positive bacteria with a characteristic high GC
content to their DNA. The ActinoBase Wiki is focused on the filamentous actinobacteria, such …

Untargeted Metabolomics of Streptomyces Species Isolated from Soils of Nepal

BR Bhattarai, K Khadayat, N Aryal, B Aryal… - Processes, 2022 - mdpi.com
Actinomycetes are natural architects of numerous secondary metabolites including
antibiotics. With increased multidrug-resistant (MDR) pathogens, antibiotics that can combat …

High Plasticity of the Amicetin Biosynthetic Pathway in Streptomyces sp. SHP 22-7 Led to the Discovery of Streptcytosine P and Cytosaminomycins F and G and …

N Aryal, J Chen, K Bhattarai, O Hennrich… - Journal of Natural …, 2022 - ACS Publications
A chemical reinvestigation of the Indonesian strain Streptomyces sp. SHP 22-7 led to the
isolation of three new pyrimidine nucleosides, along with six known analogues and …