Mass spectrometry‐based label‐free quantitative proteomics

W Zhu, JW Smith, CM Huang - BioMed research international, 2010 - Wiley Online Library
In order to study the differential protein expression in complex biological samples, strategies
for rapid, highly reproducible and accurate quantification are necessary. Isotope labeling …

Role of spectral counting in quantitative proteomics

DH Lundgren, SI Hwang, L Wu… - Expert review of …, 2010 - Taylor & Francis
Spectral count, defined as the total number of spectra identified for a protein, has gained
acceptance as a practical, label-free, semiquantitative measure of protein abundance in …

Acidic microenvironment plays a key role in human melanoma progression through a sustained exosome mediated transfer of clinically relevant metastatic molecules

Z Boussadia, J Lamberti, F Mattei, E Pizzi… - Journal of Experimental …, 2018 - Springer
Background Microenvironment cues involved in melanoma progression are largely
unknown. Melanoma is highly influenced in its aggressive phenotype by the changes it …

Proteomic analysis of blastema formation in regenerating axolotl limbs

N Rao, D Jhamb, DJ Milner, B Li, F Song, M Wang… - BMC biology, 2009 - Springer
Background Following amputation, urodele salamander limbs reprogram somatic cells to
form a blastema that self-organizes into the missing limb parts to restore the structure and …

Analysis of the formalin-fixed paraffin-embedded tissue proteome: pitfalls, challenges, and future prospectives

E Maes, V Broeckx, I Mertens, X Sagaert, H Prenen… - Amino acids, 2013 - Springer
Formalin-fixed paraffin-embedded (FFPE) tissues are a real treasure for retrospective
analysis considering the amount of samples present in hospital archives, combined with …

Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker …

NJ Nirmalan, C Hughes, J Peng… - Journal of proteome …, 2011 - ACS Publications
Annotated formalin-fixed, paraffin-embedded (FFPE) tissue archives constitute a valuable
resource for retrospective biomarker discovery. However, proteomic exploration of archival …

Quantitative proteomic analysis in metastatic renal cell carcinoma reveals a unique set of proteins with potential prognostic significance

O Masui, NMA White, LV DeSouza, O Krakovska… - Molecular & Cellular …, 2013 - ASBMB
Metastatic renal cell carcinoma (RCC) is one of the most treatment-resistant malignancies,
and patients have a dismal prognosis, with a< 10% five-year survival rate. The identification …

MDA-9 and GRP78 as potential diagnostic biomarkers for early detection of melanoma metastasis

M Guan, X Chen, Y Ma, L Tang, L Guan, X Ren, B Yu… - Tumor Biology, 2015 - Springer
Metastatic melanoma, the primary cause of skin cancer-related death, warrants new
diagnostic and therapeutic approaches that target the regulatory machinery at molecular …

Quantification of HER family receptors in breast cancer

P Nuciforo, N Radosevic-Robin, T Ng, M Scaltriti - Breast cancer research, 2015 - Springer
The clinical success of trastuzumab in breast cancer taught us that appropriate tumor
evaluation is mandatory for the correct identification of patients eligible for targeted …

Selected reaction monitoring (SRM) analysis of epidermal growth factor receptor (EGFR) in formalin fixed tumor tissue

T Hembrough, S Thyparambil, WL Liao, MM Darfler… - Clinical proteomics, 2012 - Springer
Background Analysis of key therapeutic targets such as epidermal growth factor receptor
(EGFR) in clinical tissue samples is typically done by immunohistochemistry (IHC) and is …