Graph neural networks for materials science and chemistry

P Reiser, M Neubert, A Eberhard, L Torresi… - Communications …, 2022 - nature.com
Abstract Machine learning plays an increasingly important role in many areas of chemistry
and materials science, being used to predict materials properties, accelerate simulations …

A comprehensive survey on deep graph representation learning

W Ju, Z Fang, Y Gu, Z Liu, Q Long, Z Qiao, Y Qin… - Neural Networks, 2024 - Elsevier
Graph representation learning aims to effectively encode high-dimensional sparse graph-
structured data into low-dimensional dense vectors, which is a fundamental task that has …

A comprehensive survey on deep clustering: Taxonomy, challenges, and future directions

S Zhou, H Xu, Z Zheng, J Chen, Z Li, J Bu, J Wu… - ACM Computing …, 2024 - dl.acm.org
Clustering is a fundamental machine learning task, which aim at assigning instances into
groups so that similar samples belong to the same cluster while dissimilar samples belong …

Contrastive self-supervised learning for graph classification

J Zeng, P Xie - Proceedings of the AAAI conference on Artificial …, 2021 - ojs.aaai.org
Graph classification is a widely studied problem and has broad applications. In many real-
world problems, the number of labeled graphs available for training classification models is …

Backdoor attacks to graph neural networks

Z Zhang, J Jia, B Wang, NZ Gong - … of the 26th ACM Symposium on …, 2021 - dl.acm.org
In this work, we propose the first backdoor attack to graph neural networks (GNN).
Specifically, we propose a subgraph based backdoor attack to GNN for graph classification …

Graph pooling for graph neural networks: Progress, challenges, and opportunities

C Liu, Y Zhan, J Wu, C Li, B Du, W Hu, T Liu… - arXiv preprint arXiv …, 2022 - arxiv.org
Graph neural networks have emerged as a leading architecture for many graph-level tasks,
such as graph classification and graph generation. As an essential component of the …

Molecular representation learning via heterogeneous motif graph neural networks

Z Yu, H Gao - International Conference on Machine Learning, 2022 - proceedings.mlr.press
We consider feature representation learning problem of molecular graphs. Graph Neural
Networks have been widely used in feature representation learning of molecular graphs …

GSLB: the graph structure learning benchmark

Z Li, X Sun, Y Luo, Y Zhu, D Chen… - Advances in …, 2024 - proceedings.neurips.cc
Abstract Graph Structure Learning (GSL) has recently garnered considerable attention due
to its ability to optimize both the parameters of Graph Neural Networks (GNNs) and the …

Live graph lab: Towards open, dynamic and real transaction graphs with NFT

Z Zhang, B Luo, S Lu, B He - Advances in Neural …, 2023 - proceedings.neurips.cc
Numerous studies have been conducted to investigate the properties of large-scale
temporal graphs. Despite the ubiquity of these graphs in real-world scenarios, it's usually …

Position-aware structure learning for graph topology-imbalance by relieving under-reaching and over-squashing

Q Sun, J Li, H Yuan, X Fu, H Peng, C Ji, Q Li… - Proceedings of the 31st …, 2022 - dl.acm.org
Topology-imbalance is a graph-specific imbalance problem caused by the uneven topology
positions of labeled nodes, which significantly damages the performance of GNNs. What …