Genomic prediction with whole-genome sequence data in intensely selected pig lines

R Ros-Freixedes, M Johnsson, A Whalen… - Genetics Selection …, 2022 - Springer
Background Early simulations indicated that whole-genome sequence data (WGS) could
improve the accuracy of genomic predictions within and across breeds. However, empirical …

Investigation of potential genetic factors for growth traits in yellow-feather broilers using weighted single-step genome-wide association study

X Fang, H Ye, S Zhang, L Guo, Y Xu, D Zhang, Q Nie - Poultry Science, 2023 - Elsevier
Yellow-feather broilers take a large portion of poultry industry in China due to its meat
characteristics. Improving the growth traits of yellow-feathered broilers will have great …

Integration of genome-wide association and genomic prediction for dissecting seed protein and amino acid in foxtail millet

X Zhao, Y Cao, L Shao, J Zhang, J Cui, J Shu… - Field Crops …, 2024 - Elsevier
Context The exploitation and utilization of genetic variation in crop germplasm benefit
genomics-informed breeding programs. The integration of genome-wide association study …

[HTML][HTML] Improvement of the accuracy of breeding value prediction for egg production traits in Muscovy duck using low-coverage whole-genome sequence data

H Ye, C Ji, X Liu, SF Bello, L Guo, X Fang, D Lin, Y Mo… - Poultry Science, 2025 - Elsevier
Low-coverage whole genome sequencing (lcWGS) is an effective low-cost genotyping
technology when combined with genotype imputation approaches. It facilitates cost-effective …

Genetic parameters and genomic prediction of growth and breast morphological traits in a crossbreed duck population

W Cai, J Hu, W Fan, Y Xu, J Tang, M Xie… - Evolutionary …, 2024 - Wiley Online Library
Genomic selection (GS) has great potential to increase genetic gain in poultry breeding.
However, the performance of genomic prediction in duck growth and breast morphological …

[HTML][HTML] Optimization of Whole-Genome Resequencing Depth for High-Throughput SNP Genotyping in Litopenaeus vannamei

P Lin, Y Yu, Z Bao, F Li - International Journal of Molecular Sciences, 2024 - mdpi.com
The application of whole-genome resequencing in genetic research is rapidly expanding,
yet the impact of sequencing depth on data quality and variant detection remains unclear …

Improvement in genomic prediction of maize with prior gene ontology information depends on traits and environmental conditions

B Ali, T Mary‐Huard, A Charcosset, L Moreau… - The Plant …, 2025 - Wiley Online Library
Classical genomic prediction approaches rely on statistical associations between traits and
markers rather than their biological significance. Biologically informed selection of genomic …

[HTML][HTML] Comparison of genomic prediction accuracy using different models for egg production traits in Taiwan country chicken

TC Tu, CJ Lin, MC Liu, ZT Hsu, CF Chen - Poultry Science, 2024 - Elsevier
In local chickens targeted for niche markets, genotyping costs are relatively high due to the
small population size and diverse breeding goals. The single-step genomic best linear …

Genetic architecture of body weight, carcass, and internal organs traits of Ghanaian local chickens

RA Kanlisi, EN Amuzu-Aweh, A Naazie… - Frontiers in …, 2024 - frontiersin.org
Information on the genetic architecture of the production traits of indigenous African chicken
is limited. We performed a genome-wide association study using imputed Affymetrix Axiom® …

[HTML][HTML] Genomic and Gut Microbiome Evaluations of Growth and Feed Efficiency Traits in Broilers

X Xiong, C Yu, M Qiu, Z Zhang, C Hu, S Zhu, L Yang… - Animals, 2024 - mdpi.com
In this study, we combined genomic and gut microbiome data to evaluate 13 economically
important growth and feed efficiency traits in 407 Dahen broilers, including body weight …