Long-range enhancer–promoter contacts in gene expression control

S Schoenfelder, P Fraser - Nature Reviews Genetics, 2019 - nature.com
Spatiotemporal gene expression programmes are orchestrated by transcriptional
enhancers, which are key regulatory DNA elements that engage in physical contacts with …

The 3D genome as moderator of chromosomal communication

J Dekker, L Mirny - Cell, 2016 - cell.com
Proper expression of genes requires communication with their regulatory elements that can
be located elsewhere along the chromosome. The physics of chromatin fibers imposes a …

Live-cell imaging reveals enhancer-dependent Sox2 transcription in the absence of enhancer proximity

JM Alexander, J Guan, B Li, L Maliskova, M Song… - elife, 2019 - elifesciences.org
Enhancers are important regulatory elements that can control gene activity across vast
genetic distances. However, the underlying nature of this regulation remains obscured …

LHX2-and LDB1-mediated trans interactions regulate olfactory receptor choice

K Monahan, A Horta, S Lomvardas - Nature, 2019 - nature.com
The genome is partitioned into topologically associated domains and genomic
compartments with shared chromatin valence. This architecture is constrained by the DNA …

Molecular basis and biological function of variability in spatial genome organization

EH Finn, T Misteli - Science, 2019 - science.org
BACKGROUND The eukaryotic genome is hierarchically organized in the cell nucleus into
DNA loops, chromatin domains, compartments, and, ultimately, chromosomes. Many of the …

Non-cell-autonomous disruption of nuclear architecture as a potential cause of COVID-19-induced anosmia

M Zazhytska, A Kodra, DA Hoagland, J Frere… - Cell, 2022 - cell.com
SARS-CoV-2 infects less than 1% of cells in the human body, yet it can cause severe
damage in a variety of organs. Thus, deciphering the non-cell-autonomous effects of SARS …

Recent evidence that TADs and chromatin loops are dynamic structures

AS Hansen, C Cattoglio, X Darzacq, R Tjian - Nucleus, 2018 - Taylor & Francis
Mammalian genomes are folded into spatial domains, which regulate gene expression by
modulating enhancer-promoter contacts. Here, we review recent studies on the structure …

[HTML][HTML] Super-enhancers include classical enhancers and facilitators to fully activate gene expression

JW Blayney, H Francis, A Rampasekova, B Camellato… - Cell, 2023 - cell.com
Super-enhancers are compound regulatory elements that control expression of key cell
identity genes. They recruit high levels of tissue-specific transcription factors and co …

RNA-mediated symmetry breaking enables singular olfactory receptor choice

AD Pourmorady, EV Bashkirova, AM Chiariello… - Nature, 2024 - nature.com
Olfactory receptor (OR) choice provides an extreme example of allelic competition for
transcriptional dominance, where every olfactory neuron stably transcribes one of …

Principles of odor coding in vertebrates and artificial chemosensory systems

I Manzini, D Schild, C Di Natale - Physiological reviews, 2022 - journals.physiology.org
The biological olfactory system is the sensory system responsible for the detection of the
chemical composition of the environment. Several attempts to mimic biological olfactory …