Photophysics of deoxycytidine and 5-methyldeoxycytidine in solution: a comprehensive picture by quantum mechanical calculations and femtosecond fluorescence …

L Martínez-Fernández, AJ Pepino… - Journal of the …, 2017 - ACS Publications
The study concerns the relaxation of electronic excited states of the DNA nucleoside
deoxycytidine (dCyd) and its methylated analogue 5-methyldeoxycytidine (5mdCyd), known …

Photoredox-HAT Catalysis for Primary Amine α-C–H Alkylation: Mechanistic Insight with Transient Absorption Spectroscopy

M Sneha, GL Thornton, L Lewis-Borrell… - ACS …, 2023 - ACS Publications
The synergistic use of (organo) photoredox catalysts with hydrogen-atom transfer (HAT)
cocatalysts has emerged as a powerful strategy for innate C (sp3)–H bond functionalization …

Ultrafast dynamics of the two lowest bright excited states of cytosine and 1-methylcytosine: A quantum dynamical study

M Yaghoubi Jouybari, Y Liu, R Improta… - Journal of Chemical …, 2020 - ACS Publications
The nonadiabatic quantum dynamics (QD) of cytosine and 1-methylcytosine in the gas
phase is simulated for 250 fs after a photoexcitation to one of the first two bright states. The …

Resolving ultrafast photoinduced deactivations in water-solvated pyrimidine nucleosides

AJ Pepino, J Segarra-Martí, A Nenov… - The Journal of …, 2017 - ACS Publications
For the first time, ultrafast deactivations of photoexcited water-solvated pyrimidine
nucleosides are mapped employing hybrid QM (CASPT2)/MM (AMBER) optimizations that …

Fragment diabatization linear vibronic coupling Model for quantum dynamics of multichromophoric systems: population of the charge-transfer state in the photoexcited …

JA Green, M Yaghoubi Jouybari, H Asha… - Journal of Chemical …, 2021 - ACS Publications
We introduce a method (FrD-LVC) based on a fragment diabatization (FrD) for the
parametrization of a linear vibronic coupling (LVC) model suitable for studying the …

Excited-state dynamics in the RNA nucleotide uridine 5′-monophosphate investigated using femtosecond broadband transient absorption spectroscopy

MM Brister, CE Crespo-Hernández - The journal of physical …, 2019 - ACS Publications
Damage to RNA from ultraviolet radiation induces chemical modifications to the
nucleobases. Unraveling the excited states involved in these reactions is essential; …

Excited state decay pathways of 2′-deoxy-5-methylcytidine and deoxycytidine revisited in solution: A comprehensive kinetic study by femtosecond transient …

X Wang, Z Zhou, Y Tang, J Chen… - The Journal of Physical …, 2018 - ACS Publications
Methylated cytosine is proved to have an important role as an epigenetic signal in gene
regulation and is often referred to “the fifth base of DNA”. A comprehensive understanding of …

The DNA nucleobase thymine in motion–Intersystem crossing simulated with surface hopping

S Mai, M Richter, P Marquetand, L González - Chemical Physics, 2017 - Elsevier
We report ab initio excited-state dynamics simulations on isolated thymine to investigate the
mechanism of intersystem crossing, based on CASSCF potential energy surfaces and the …

The photophysics of protonated cytidine and hemiprotonated cytidine base pair: A computational study

L Martinez‐Fernandez, R Improta - Photochemistry and …, 2024 - Wiley Online Library
We here study the effect that a lowering of the pH has on the excited state processes of
cytidine and a cytidine/cytidine pair in solution, by integrating time‐dependent density …

Excited state absorption of DNA bases in the gas phase and in chloroform solution: a comparative quantum mechanical study

DA Fedotov, AC Paul, H Koch, F Santoro… - Physical Chemistry …, 2022 - pubs.rsc.org
We study the excited state absorption (ESA) properties of the four DNA bases (thymine,
cytosine, adenine, and guanine) by different single reference quantum mechanical methods …