Fragment-to-lead medicinal chemistry publications in 2020

IJP De Esch, DA Erlanson, W Jahnke… - Journal of medicinal …, 2021 - ACS Publications
Fragment-based drug discovery (FBDD) continues to evolve and make an impact in the
pharmaceutical sciences. We summarize successful fragment-to-lead studies that were …

[HTML][HTML] Different applications and differentiated libraries for crystallographic fragment screening

J Watt, MP Martin, JA Endicott, MEM Noble - Current Opinion in Structural …, 2025 - Elsevier
Macromolecular X-ray crystallography allows detection and characterisation of the binding
of small, low-affinity chemical fragments. Here we review the utility of fragment screening for …

Subpocket similarity-based hit identification for challenging targets: Application to the WDR domain of LRRK2

M Eguida, G Bret, F Sindt, F Li, I Chau… - Journal of Chemical …, 2024 - ACS Publications
We herewith applied a priori a generic hit identification method (POEM) for difficult targets of
known three-dimensional structure, relying on the simple knowledge of physicochemical …

Target-focused library design by pocket-applied computer vision and fragment deep generative linking

M Eguida, C Schmitt-Valencia, M Hibert… - Journal of Medicinal …, 2022 - ACS Publications
We here describe a computational approach (POEM: Pocket Oriented Elaboration of
Molecules) to drive the generation of target-focused libraries while taking advantage of all …

ChemInformatics Model Explorer (CIME): exploratory analysis of chemical model explanations

C Humer, H Heberle, F Montanari, T Wolf… - Journal of …, 2022 - Springer
The introduction of machine learning to small molecule research–an inherently
multidisciplinary field in which chemists and data scientists combine their expertise and …

A novel strategy for designing the magic shotguns for distantly related target pairs

Y Luo, P Wang, M Mou, H Zheng, J Hong… - Briefings in …, 2023 - academic.oup.com
Due to its promising capacity in improving drug efficacy, polypharmacology has emerged to
be a new theme in the drug discovery of complex disease. In the process of novel multi …

Kinase inhibitor scaffold hopping with deep learning approaches

L Hu, Y Yang, S Zheng, J Xu, T Ran… - Journal of Chemical …, 2021 - ACS Publications
The protein kinase family contains many promising drug targets. Many kinase inhibitors
target the ATP-binding pocket, leading to approved drugs in past decades. Scaffold hopping …

Efficient hit-to-lead searching of kinase inhibitor chemical space via computational fragment merging

GV Andrianov, WJ Gabriel Ong… - Journal of chemical …, 2021 - ACS Publications
In early-stage drug discovery, the hit-to-lead optimization (or “hit expansion”) stage entails
starting from a newly identified active compound and improving its potency or other …

Guided docking as a data generation approach facilitates structure-based machine learning on kinases

M Backenköhler, J Groß, V Wolf… - Journal of Chemical …, 2024 - ACS Publications
Drug discovery pipelines nowadays rely on machine learning models to explore and
evaluate large chemical spaces. While including 3D structural information is considered …

Identification of a Potent CDK8 Inhibitor Using Structure-Based Virtual Screening

TE Lin, CH Chou, YW Wu, TY Sung… - Journal of Chemical …, 2025 - ACS Publications
Pulmonary fibrosis is excessive scarring of the lung tissues. Transforming growth factor-beta
(TGF-β) has been implicated in pulmonary fibrosis due to its ability to induce the epithelial-to …