Carbohydrate-active enzymes (CAZymes) in the gut microbiome

JF Wardman, RK Bains, P Rahfeld… - Nature Reviews …, 2022 - nature.com
The 1013–1014 microorganisms present in the human gut (collectively known as the human
gut microbiota) dedicate substantial percentages of their genomes to the degradation and …

[HTML][HTML] Polyphenol-mediated gut microbiota modulation: toward prebiotics and further

MC Rodríguez-Daza, EC Pulido-Mateos… - Frontiers in …, 2021 - frontiersin.org
The genome of gut microbes encodes a collection of enzymes whose metabolic functions
contribute to the bioavailability and bioactivity of unabsorbed (poly) phenols. Datasets from …

[HTML][HTML] Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort

Y Qin, AS Havulinna, Y Liu, P Jousilahti, SC Ritchie… - Nature Genetics, 2022 - nature.com
Human genetic variation affects the gut microbiota through a complex combination of
environmental and host factors. Here we characterize genetic variations associated with …

[HTML][HTML] Enterosignatures define common bacterial guilds in the human gut microbiome

C Frioux, R Ansorge, E Özkurt, CG Nedjad, J Fritscher… - Cell Host & Microbe, 2023 - cell.com
The human gut microbiome composition is generally in a stable dynamic equilibrium, but it
can deteriorate into dysbiotic states detrimental to host health. To disentangle the inherent …

Multifaceted computational modeling in glycoscience

S Perez, O Makshakova - Chemical Reviews, 2022 - ACS Publications
Glycoscience assembles all the scientific disciplines involved in studying various molecules
and macromolecules containing carbohydrates and complex glycans. Such an ensemble …

Combinatorial assembly and design of enzymes

R Lipsh-Sokolik, O Khersonsky, SP Schröder… - Science, 2023 - science.org
The design of structurally diverse enzymes is constrained by long-range interactions that are
necessary for accurate folding. We introduce an atomistic and machine learning strategy for …

[HTML][HTML] A subfamily roadmap of the evolutionarily diverse glycoside hydrolase family 16 (GH16)

AH Viborg, N Terrapon, V Lombard, G Michel… - Journal of Biological …, 2019 - ASBMB
Glycoside hydrolase family (GH) 16 comprises a large and taxonomically diverse family of
glycosidases and transglycosidases that adopt a common β-jelly-roll fold and are active on a …

[HTML][HTML] Structures and functions of algal glycans shape their capacity to sequester carbon in the ocean

M Bligh, N Nguyen, H Buck-Wiese… - Current Opinion in …, 2022 - Elsevier
Algae synthesise structurally complex glycans to build a protective barrier, the extracellular
matrix. One function of matrix glycans is to slow down microorganisms that try to …

[HTML][HTML] Cellulose-and xylan-degrading yeasts: Enzymes, applications and biotechnological potential

K Šuchová, C Fehér, JL Ravn, S Bedő, P Biely… - Biotechnology …, 2022 - Elsevier
Microbes and their carbohydrate-active enzymes are central for depolymerization of
complex lignocellulosic polysaccharides in the global carbon cycle. Their unique abilities to …

Starch-binding domains as CBM families–history, occurrence, structure, function and evolution

Š Janeček, F Mareček, EA MacGregor… - Biotechnology Advances, 2019 - Elsevier
The term “starch-binding domain”(SBD) has been applied to a domain within an amylolytic
enzyme that gave the enzyme the ability to bind onto raw, ie thermally untreated, granular …