Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database
Background Current sequencing technology enables taxonomic profiling of microbial
ecosystems at high resolution and depth by using the 16S rRNA gene as a phylogenetic …
ecosystems at high resolution and depth by using the 16S rRNA gene as a phylogenetic …
Determining the reliability of measuring mercury cycling gene abundance with correlations with mercury and methylmercury concentrations
GA Christensen, CM Gionfriddo, AJ King… - … science & technology, 2019 - ACS Publications
Methylmercury (MeHg) is a bioaccumulative toxic contaminant in many ecosystems, but
factors governing its production are poorly understood. Recent work has shown that the …
factors governing its production are poorly understood. Recent work has shown that the …
Direct 16S rRNA-seq from bacterial communities: a PCR-independent approach to simultaneously assess microbial diversity and functional activity potential of each …
The analysis of environmental microbial communities has largely relied on a PCR-
dependent amplification of genes entailing species identity as 16S rRNA. This approach is …
dependent amplification of genes entailing species identity as 16S rRNA. This approach is …
Archaeal and bacterial communities in three alkaline hot springs in Heart Lake Geyser Basin, Yellowstone National Park
The Heart Lake Geyser Basin (HLGB) is remotely located at the base of Mount Sheridan in
southern Yellowstone National Park (YNP), Wyoming, USA and is situated along Witch …
southern Yellowstone National Park (YNP), Wyoming, USA and is situated along Witch …
Environmental bio-monitoring with high-throughput sequencing
J Wang, PA McLenachan, PJ Biggs… - Briefings in …, 2013 - academic.oup.com
There is much interest in using high-throughput DNA sequencing methodology to monitor
microorganisms, complex plant and animal communities. However, there are experimental …
microorganisms, complex plant and animal communities. However, there are experimental …
User‐friendly bioinformatics pipeline gDAT (graphical downstream analysis tool) for analysing rDNA sequences
High‐throughput sequencing (HTS) of multiple organisms in parallel (metabarcoding) has
become a routine and cost‐effective method for the analysis of microbial communities in …
become a routine and cost‐effective method for the analysis of microbial communities in …
Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversity
Recent advances in next-generation sequencing (NGS) technologies spur progress in
determining the microbial diversity in various ecosystems by highlighting, for example, the …
determining the microbial diversity in various ecosystems by highlighting, for example, the …
Investigation of coal-associated bacterial and archaeal populations from a diffusive microbial sampler (DMS)
EP Barnhart, KB De León, BD Ramsay… - International Journal of …, 2013 - Elsevier
Abstract The Powder River Basin (PRB) in southeastern Montana and northeastern
Wyoming contains massive coal deposits with biologically generated coal bed methane …
Wyoming contains massive coal deposits with biologically generated coal bed methane …
Hydrogeochemistry and coal-associated bacterial populations from a methanogenic coal bed
EP Barnhart, EP Weeks, EJP Jones, DJ Ritter… - International Journal of …, 2016 - Elsevier
Biogenic coalbed methane (CBM), a microbially-generated source of natural gas trapped
within coal beds, is an important energy resource in many countries. Specific bacterial …
within coal beds, is an important energy resource in many countries. Specific bacterial …
Mineral microniches control the diversity of subsurface microbial populations
AA Jones, PC Bennett - Geomicrobiology Journal, 2014 - Taylor & Francis
Rocks and minerals surround the subsurface microbial habitat, yet mineralogy and rock
chemistry are rarely considered when characterizing microbial diversity and the microbial …
chemistry are rarely considered when characterizing microbial diversity and the microbial …