CRISPR-based diagnostics

MM Kaminski, OO Abudayyeh, JS Gootenberg… - Nature Biomedical …, 2021 - nature.com
The accurate and timely diagnosis of disease is a prerequisite for efficient therapeutic
intervention and epidemiological surveillance. Diagnostics based on the detection of nucleic …

Amplification-free CRISPR/Cas detection technology: challenges, strategies, and perspectives

H Li, Y Xie, F Chen, H Bai, L Xiu, X Zhou… - Chemical Society …, 2023 - pubs.rsc.org
Rapid and accurate molecular diagnosis is a prerequisite for precision medicine, food
safety, and environmental monitoring. The clustered regularly interspaced short palindromic …

Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants

KS Makarova, YI Wolf, J Iranzo, SA Shmakov… - Nature Reviews …, 2020 - nature.com
The number and diversity of known CRISPR–Cas systems have substantially increased in
recent years. Here, we provide an updated evolutionary classification of CRISPR–Cas …

The arms race between bacteria and their phage foes

HG Hampton, BNJ Watson, PC Fineran - Nature, 2020 - nature.com
Bacteria are under immense evolutionary pressure from their viral invaders—
bacteriophages. Bacteria have evolved numerous immune mechanisms, both innate and …

[HTML][HTML] Cyclic CMP and cyclic UMP mediate bacterial immunity against phages

N Tal, BR Morehouse, A Millman, A Stokar-Avihail… - Cell, 2021 - cell.com
Summary The cyclic pyrimidines 3′, 5′-cyclic cytidine monophosphate (cCMP) and 3′,
5′-cyclic uridine monophosphate (cUMP) have been reported in multiple organisms and …

Diverse virus-encoded CRISPR-Cas systems include streamlined genome editors

B Al-Shayeb, P Skopintsev, KM Soczek, EC Stahl, Z Li… - Cell, 2022 - cell.com
CRISPR-Cas systems are host-encoded pathways that protect microbes from viral infection
using an adaptive RNA-guided mechanism. Using genome-resolved metagenomics, we find …

The pan-immune system of bacteria: antiviral defence as a community resource

A Bernheim, R Sorek - Nature reviews microbiology, 2020 - nature.com
Viruses and their hosts are engaged in a constant arms race leading to the evolution of
antiviral defence mechanisms. Recent studies have revealed that the immune arsenal of …

CBASS to cGAS-STING: the origins and mechanisms of nucleotide second messenger immune signaling

KM Slavik, PJ Kranzusch - Annual Review of Virology, 2023 - annualreviews.org
Host defense against viral pathogens is an essential function for all living organisms. In cell-
intrinsic innate immunity, dedicated sensor proteins recognize molecular signatures of …

CRISPR/Cas systems towards next-generation biosensing

Y Li, S Li, J Wang, G Liu - Trends in biotechnology, 2019 - cell.com
Beyond its remarkable genome editing ability, the CRISPR/Cas9 effector has also been
utilized in biosensing applications. The recent discovery of the collateral RNA cleavage …

Uncovering the functional diversity of rare CRISPR-Cas systems with deep terascale clustering

H Altae-Tran, S Kannan, AJ Suberski, KS Mears… - Science, 2023 - science.org
Microbial systems underpin many biotechnologies, including CRISPR, but the exponential
growth of sequence databases makes it difficult to find previously unidentified systems. In …