Human long noncoding RNA interactome: detection, characterization and function

M Kazimierczyk, MK Kasprowicz, ME Kasprzyk… - International journal of …, 2020 - mdpi.com
The application of a new generation of sequencing techniques has revealed that most of the
genome has already been transcribed. However, only a small part of the genome codes …

Comparative transcriptomics in human and mouse

A Breschi, TR Gingeras, R Guigó - Nature Reviews Genetics, 2017 - nature.com
Cross-species comparisons of genomes, transcriptomes and gene regulation are now
feasible at unprecedented resolution and throughput, enabling the comparison of human …

Developmental dynamics of lncRNAs across mammalian organs and species

I Sarropoulos, R Marin, M Cardoso-Moreira… - Nature, 2019 - nature.com
Although many long noncoding RNAs (lncRNAs) have been identified in human and other
mammalian genomes, there has been limited systematic functional characterization of these …

Transcriptome and translatome co-evolution in mammals

ZY Wang, E Leushkin, A Liechti, S Ovchinnikova… - Nature, 2020 - nature.com
Gene-expression programs define shared and species-specific phenotypes, but their
evolution remains largely uncharacterized beyond the transcriptome layer. Here we report …

Alternative splicing during mammalian organ development

PV Mazin, P Khaitovich, M Cardoso-Moreira… - Nature …, 2021 - nature.com
Alternative splicing (AS) is pervasive in mammalian genomes, yet cross-species
comparisons have been largely restricted to adult tissues and the functionality of most AS …

The molecular evolution of spermatogenesis across mammals

F Murat, N Mbengue, SB Winge, T Trefzer, E Leushkin… - Nature, 2023 - nature.com
The testis produces gametes through spermatogenesis and evolves rapidly at both the
morphological and molecular level in mammals,,,,–, probably owing to the evolutionary …

[HTML][HTML] Expanded expression landscape and prioritization of circular RNAs in mammals

P Ji, W Wu, S Chen, Y Zheng, L Zhou, J Zhang… - Cell reports, 2019 - cell.com
Circular RNAs (circRNAs) are emerging as essential regulators of various biological and
disease processes. To comprehensively understand the diversity of circRNAs and prioritize …

Identification of constrained sequence elements across 239 primate genomes

LFK Kuderna, JC Ulirsch, S Rashid, M Ameen… - Nature, 2024 - nature.com
Noncoding DNA is central to our understanding of human gene regulation and complex
diseases,, and measuring the evolutionary sequence constraint can establish the functional …

A pig BodyMap transcriptome reveals diverse tissue physiologies and evolutionary dynamics of transcription

L Jin, Q Tang, S Hu, Z Chen, X Zhou, B Zeng… - Nature …, 2021 - nature.com
A comprehensive transcriptomic survey of pigs can provide a mechanistic understanding of
tissue specialization processes underlying economically valuable traits and accelerate their …

Targeting and engineering long non-coding RNAs for cancer therapy

M Coan, S Haefliger, S Ounzain, R Johnson - Nature Reviews Genetics, 2024 - nature.com
RNA therapeutics (RNATx) aim to treat diseases, including cancer, by targeting or
employing RNA molecules for therapeutic purposes. Amongst the most promising targets …