Nonequilibrium physics in biology

X Fang, K Kruse, T Lu, J Wang - Reviews of Modern Physics, 2019 - APS
Life is characterized by a myriad of complex dynamic processes allowing organisms to grow,
reproduce, and evolve. Physical approaches for describing systems out of thermodynamic …

Stochastic mechano-chemical kinetics of molecular motors: a multidisciplinary enterprise from a physicist's perspective

D Chowdhury - Physics Reports, 2013 - Elsevier
A molecular motor is made of either a single macromolecule or a macromolecular complex.
Just like their macroscopic counterparts, molecular motors “transduce” input energy into …

Contractile units in disordered actomyosin bundles arise from F-actin buckling

M Lenz, T Thoresen, ML Gardel, AR Dinner - Physical review letters, 2012 - APS
Bundles of filaments and motors are central to contractility in cells. The classic example is
striated muscle, where actomyosin contractility is mediated by highly organized sarcomeres …

Coordination and collective properties of molecular motors: theory

T Guérin, J Prost, P Martin, JF Joanny - Current opinion in cell biology, 2010 - Elsevier
Many cellular processes require molecular motors to produce motion and forces. Single
molecule experiments have led to a precise description of how a motor works. Under most …

Living matter: mesoscopic active materials

A Bernheim‐Groswasser, NS Gov… - Advanced …, 2018 - Wiley Online Library
An introduction to the physical properties of living active matter at the mesoscopic scale
(tens of nanometers to micrometers) and their unique features compared with “dead,” …

Spontaneous mechanical oscillations: implications for developing organisms

K Kruse, D Riveline - Current topics in developmental biology, 2011 - Elsevier
Major transformations of cells during embryonic development are traditionally associated
with the activation or inhibition of genes and with protein modifications. The contributions of …

Forced desorption of semiflexible polymers, adsorbed and driven by molecular motors

A Chaudhuri, D Chaudhuri - Soft Matter, 2016 - pubs.rsc.org
We formulate and characterize a model to describe the dynamics of semiflexible polymers in
the presence of activity due to motor proteins attached irreversibly to a substrate, and a …

Active elastohydrodynamics of vesicles in narrow blind constrictions

TG Fai, R Kusters, J Harting, CH Rycroft… - Physical Review …, 2017 - APS
Fluid-resistance limited transport of vesicles through narrow constrictions is a recurring
theme in many biological and engineering applications. Inspired by the motor-driven …

Bidirectional motion of motor assemblies and the weak-noise escape problem

T Guérin, J Prost, JF Joanny - Physical Review E—Statistical, Nonlinear, and …, 2011 - APS
We present a detailed calculation that enables us to estimate the reversal time of a
molecular motor assembly that displays bidirectional motion in the limit of weak noise. We …

Motion reversal of molecular motor assemblies due to weak noise

T Guérin, J Prost, JF Joanny - Physical Review Letters, 2011 - APS
Bidirectional motion is an example of collective behavior of molecular motors. It occurs at
finite noise level in a nonequilibrium system. We consider this problem as a first exit …