[HTML][HTML] Applications of machine learning in human microbiome studies: a review on feature selection, biomarker identification, disease prediction and treatment

LJ Marcos-Zambrano… - Frontiers in …, 2021 - frontiersin.org
The number of microbiome-related studies has notably increased the availability of data on
human microbiome composition and function. These studies provide the essential material …

Toward a fully resolved fungal tree of life

TY James, JE Stajich, CT Hittinger… - Annual Review of …, 2020 - annualreviews.org
In this review, we discuss the current status and future challenges for fully elucidating the
fungal tree of life. In the last 15 years, advances in genomic technologies have …

[HTML][HTML] The potential role of marine fungi in plastic degradation–a review

E Zeghal, A Vaksmaa, H Vielfaure… - Frontiers in Marine …, 2021 - frontiersin.org
Plastic debris has been accumulating in the marine realm since the start of plastic mass
production in the 1950s. Due to the adverse effects on ocean life, the fate of plastics in the …

High‐throughput identification and diagnostics of pathogens and pests: overview and practical recommendations

L Tedersoo, R Drenkhan, S Anslan… - Molecular ecology …, 2019 - Wiley Online Library
High‐throughput identification technologies provide efficient tools for understanding the
ecology and functioning of microorganisms. Yet, these methods have been only rarely used …

[HTML][HTML] A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

S Banos, G Lentendu, A Kopf, T Wubet, FO Glöckner… - BMC microbiology, 2018 - Springer
Background Several fungi-specific primers target the 18S rRNA gene sequence, one of the
prominent markers for fungal classification. The design of most primers goes back to the last …

[PDF][PDF] Utility of various molecular markers in fungal identification and phylogeny

AD Tekpinar, A Kalmer - Nova Hedwigia, 2019 - researchgate.net
Identification of fungi to the species level has some challenges because of great diversity in
morphology and ecology. Therefore, developing an efficient species recognition system …

[HTML][HTML] EukRef: phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution

J Del Campo, M Kolisko, V Boscaro… - PLoS …, 2018 - journals.plos.org
Environmental sequencing has greatly expanded our knowledge of micro-eukaryotic
diversity and ecology by revealing previously unknown lineages and their distribution …

Glacier shrinkage will accelerate downstream decomposition of organic matter and alters microbiome structure and function

TJ Kohler, S Fodelianakis, G Michoud… - Global Change …, 2022 - Wiley Online Library
The shrinking of glaciers is among the most iconic consequences of climate change. Despite
this, the downstream consequences for ecosystem processes and related microbiome …

Safety evaluation of Fy Protein™(Nutritional Fungi Protein), a macroingredient for human consumption

B Furey, K Slingerland, MR Bauter, C Dunn… - Food and Chemical …, 2022 - Elsevier
Abstract Fy Protein™(Nutritional Fungi Protein) is a macro-ingredient produced from the
fermentation of the fungal microorganism Fusarium strain flavolapis, isolated from springs in …

Quantitative microbial risk assessment and molecular biology: paths to integration

CN Haas - Environmental science & technology, 2020 - ACS Publications
Quantitative microbial risk assessment (QMRA) has now been in use for over 35 years and
has formed the basis for developing criteria for ensuring public health related to water, food …