Multi-objective stochastic search for sampling local minima in the protein energy surface

B Olson, A Shehu - Proceedings of the International Conference on …, 2013 - dl.acm.org
We present an evolutionary stochastic search algorithm to obtain a discrete representation
of the protein energy surface in terms of an ensemble of conformations representing local …

[HTML][HTML] A population-based evolutionary search approach to the multiple minima problem in de novo protein structure prediction

S Saleh, B Olson, A Shehu - BMC structural biology, 2013 - Springer
Background Elucidating the native structure of a protein molecule from its sequence of
amino acids, a problem known as de novo structure prediction, is a long standing challenge …

Improved sampling based motion planning through local learning

CP Ekenna - 2016 - oaktrust.library.tamu.edu
Every motion made by a moving object is either planned implicitly, eg, human natural
movement from one point to another, or explicitly, eg, pre-planned information about where …

[PDF][PDF] Studying learning techniques in different phases of prm construction

C Ekenna, D Uwacu, S Thomas… - Machine Learning in …, 2015 - cs.unm.edu
Probabilistic Roadmap Methods (PRMs) solve the motion planning problem in two phases
by sampling free configurations and connecting them together to build a map that is used to …

Decoy database improvement for protein folding

HY Yeh, A Lindsey, CP Wu, S Thomas… - Journal of …, 2015 - liebertpub.com
Predicting protein structures and simulating protein folding are two of the most important
problems in computational biology today. Simulation methods rely on a scoring function to …

Improving decoy databases for protein folding algorithms

A Lindsey, HY Yeh, CP Wu, S Thomas… - Proceedings of the 5th …, 2014 - dl.acm.org
Predicting protein structures and simulating protein folding are two of the most important
problems in computational biology today. Simulation methods rely on a scoring function to …

[引用][C] Probabilistic algorithms for modeling protein structure and dynamics

KP Molloy - 2015