iMEC: Online marker efficiency calculator

A Amiryousefi, J Hyvönen… - Applications in plant …, 2018 - Wiley Online Library
Premise of the Study To accurately design plant genetic studies, the information content of
utilized markers and primers must be calculated. Plant genotyping studies should take into …

Genetic and genomic monitoring with minimally invasive sampling methods

EL Carroll, MW Bruford, JA DeWoody… - Evolutionary …, 2018 - Wiley Online Library
The decreasing cost and increasing scope and power of emerging genomic technologies
are reshaping the field of molecular ecology. However, many modern genomic approaches …

High‐throughput microsatellite genotyping in ecology: Improved accuracy, efficiency, standardization and success with low‐quantity and degraded DNA

M De Barba, C Miquel, S Lobréaux… - Molecular Ecology …, 2017 - Wiley Online Library
Microsatellite markers have played a major role in ecological, evolutionary and conservation
research during the past 20 years. However, technical constrains related to the use of …

The birth and death of olfactory receptor gene families in mammalian niche adaptation

GM Hughes, ESM Boston, JA Finarelli… - Molecular biology …, 2018 - academic.oup.com
The olfactory receptor (OR) gene families, which govern mammalian olfaction, have
undergone extensive expansion and contraction through duplication and pseudogenization …

Application of microsatellite genotyping by sequencing (SSR-GBS) to measure genetic diversity of the East African Oreochromis niloticus

PD Tibihika, M Curto, E Dornstauder-Schrammel… - Conservation …, 2019 - Springer
Microsatellites play an important role when investigating population and ecological genetics,
although high effort in development and genotyping constitute a technical constraint and …

SSR‐seq: Genotyping of microsatellites using next‐generation sequencing reveals higher level of polymorphism as compared to traditional fragment size scoring

P Šarhanová, S Pfanzelt, R Brandt… - Ecology and …, 2018 - Wiley Online Library
Microsatellites (or simple sequence repeats, SSR) are widely used markers in population
genetics. Traditionally, genotyping was and still is carried out through recording fragment …

Molecular genetic diversity and differentiation of Nile tilapia (Oreochromis niloticus, L. 1758) in East African natural and stocked populations

PD Tibihika, M Curto, E Alemayehu… - BMC Evolutionary …, 2020 - Springer
Background The need for enhancing the productivity of fisheries in Africa triggered the
introduction of non-native fish, causing dramatic changes to local species. In East Africa, the …

Unraveling hierarchical genetic structure in a marine metapopulation: A comparison of three high‐throughput genotyping approaches

CC D'Aloia, JA Andrés, SM Bogdanowicz… - Molecular …, 2020 - Wiley Online Library
Marine metapopulations often exhibit subtle population structure that can be difficult to
detect. Given recent advances in high‐throughput sequencing, an emerging question is …

Rapid and easy construction of a simplified amplicon sequencing (simplified AmpSeq) library for marker-assisted selection

S Nishio, S Moriya, M Kunihisa, Y Takeuchi, A Imai… - Scientific Reports, 2023 - nature.com
Marker-assisted selection (MAS) is fundamental for plant breeding programs, as it can
identify desirable seedlings at a young stage and reduce the cost, time and space needed …

Application of a SSR‐GBS marker system on investigation of European Hedgehog species and their hybrid zone dynamics

M Curto, S Winter, A Seiter, L Schmid… - Ecology and …, 2019 - Wiley Online Library
By applying second‐generation sequencing technologies to microsatellite genotyping,
sequence information is produced which can result in high‐resolution population genetics …