Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges

A Gouin, A Bretaudeau, K Nam, S Gimenez, JM Aury… - Scientific reports, 2017 - nature.com
Emergence of polyphagous herbivorous insects entails significant adaptation to recognize,
detoxify and digest a variety of host-plants. Despite of its biological and practical importance …

Multi-scale coding of genomic information: From DNA sequence to genome structure and function

A Arneodo, C Vaillant, B Audit, F Argoul… - Physics Reports, 2011 - Elsevier
Understanding how chromatin is spatially and dynamically organized in the nucleus of
eukaryotic cells and how this affects genome functions is one of the main challenges of cell …

Positional orthology: putting genomic evolutionary relationships into context

CN Dewey - Briefings in bioinformatics, 2011 - academic.oup.com
Orthology is a powerful refinement of homology that allows us to describe more precisely the
evolution of genomes and understand the function of the genes they contain. However …

Footprints of inversions at present and past pseudoautosomal boundaries in human sex chromosomes

C Lemaitre, MDV Braga, C Gautier… - Genome biology and …, 2009 - academic.oup.com
The human sex chromosomes have stopped recombining gradually, which has left five
evolutionary strata on the X chromosome. Y inversions are thought to have suppressed X–Y …

Reexamining the P-Element Invasion of Drosophila melanogaster Through the Lens of piRNA Silencing

ES Kelleher - Genetics, 2016 - academic.oup.com
Transposable elements (TEs) are both important drivers of genome evolution and genetic
parasites with potentially dramatic consequences for host fitness. The recent explosion of …

Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation

C Lemaitre, L Zaghloul, MF Sagot, C Gautier… - BMC genomics, 2009 - Springer
Abstract Background The Intergenic Breakage Model, which is the current model of
structural genome evolution, considers that evolutionary rearrangement breakages happen …

Genomic architecture of endogenous ichnoviruses reveals distinct evolutionary pathways leading to virus domestication in parasitic wasps

F Legeai, BF Santos, S Robin, A Bretaudeau… - BMC biology, 2020 - Springer
Abstract Background Polydnaviruses (PDVs) are mutualistic endogenous viruses inoculated
by some lineages of parasitoid wasps into their hosts, where they facilitate successful wasp …

Open chromatin encoded in DNA sequence is the signature of 'master'replication origins in human cells

B Audit, L Zaghloul, C Vaillant… - Nucleic acids …, 2009 - academic.oup.com
For years, progress in elucidating the mechanisms underlying replication initiation and its
coupling to transcriptional activities and to local chromatin structure has been hampered by …

Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny

AS Véron, C Lemaitre, C Gautier, V Lacroix, MF Sagot - BMC genomics, 2011 - Springer
Background Folding and intermingling of chromosomes has the potential of bringing close to
each other loci that are very distant genomically or even on different chromosomes. On the …

Cassis: detection of genomic rearrangement breakpoints

C Baudet, C Lemaitre, Z Dias, C Gautier… - …, 2010 - academic.oup.com
Genomes undergo large structural changes that alter their organization. The chromosomal
regions affected by these rearrangements are called breakpoints, while those which have …