Multiscale simulations of biological membranes: the challenge to understand biological phenomena in a living substance

G Enkavi, M Javanainen, W Kulig, T Róg… - Chemical …, 2019 - ACS Publications
Biological membranes are tricky to investigate. They are complex in terms of molecular
composition and structure, functional over a wide range of time scales, and characterized by …

Phosphatidylinositol (4, 5) bisphosphate: diverse functions at the plasma membrane

M Katan, S Cockcroft - Essays in biochemistry, 2020 - portlandpress.com
Abstract Phosphatidylinositol (4, 5) bisphosphate (PI (4, 5) P2) has become a major focus in
biochemistry, cell biology and physiology owing to its diverse functions at the plasma …

Novel roles of phosphoinositides in signaling, lipid transport, and disease

GRV Hammond, JE Burke - Current Opinion in Cell Biology, 2020 - Elsevier
Phosphoinositides (PPIns) are lipid signaling molecules that act as master regulators of
cellular signaling. Recent studies have revealed novel roles of PPIns in myriad cellular …

Principles of self-organization and load adaptation by the actin cytoskeleton during clathrin-mediated endocytosis

M Akamatsu, R Vasan, D Serwas, MA Ferrin… - Elife, 2020 - elifesciences.org
Force generation by actin assembly shapes cellular membranes. An experimentally
constrained multiscale model shows that a minimal branched actin network is sufficient to …

Epsin1-mediated exosomal sorting of Dll4 modulates the tubular-macrophage crosstalk in diabetic nephropathy

JL Liu, L Zhang, Y Huang, XH Li, YF Liu, SM Zhang… - Molecular Therapy, 2023 - cell.com
Tubular epithelial cells (TECs) play critical roles in the development of diabetic nephropathy
(DN), and can activate macrophages through the secretion of exosomes. However, the …

[HTML][HTML] Capturing the mechanics of clathrin-mediated endocytosis

SM Smith, CJ Smith - Current Opinion in Structural Biology, 2022 - Elsevier
Clathrin-mediated endocytosis enables selective uptake of molecules into cells in response
to changing cellular needs. It occurs through assembly of coat components around the …

[HTML][HTML] Biophysical screening pipeline for cryo-EM grid preparation of membrane proteins

S Niebling, K Veith, B Vollmer, J Lizarrondo… - Frontiers in Molecular …, 2022 - frontiersin.org
Successful sample preparation is the foundation to any structural biology technique.
Membrane proteins are of particular interest as these are important targets for drug design …

Computational models in the service of X‐ray and cryo‐electron microscopy structure determination

A Kryshtafovych, J Moult, R Albrecht… - Proteins: Structure …, 2021 - Wiley Online Library
Critical assessment of structure prediction (CASP) conducts community experiments to
determine the state of the art in computing protein structure from amino acid sequence. The …

Attracted to membranes: lipid-binding domains in plants

F de Jong, T Munnik - Plant Physiology, 2021 - academic.oup.com
Membranes are essential for cells and organelles to function. As membranes are
impermeable to most polar and charged molecules, they provide electrochemical energy to …

Subtleties in Clathrin heavy chain binding boxes provide selectivity among adaptor proteins of budding yeast

LA Defelipe, K Veith, O Burastero… - Nature …, 2024 - nature.com
Clathrin forms a triskelion, or three-legged, network that regulates cellular processes by
facilitating cargo internalization and trafficking in eukaryotes. Its N-terminal domain is crucial …