An overview of biomedical entity linking throughout the years
E French, BT McInnes - Journal of biomedical informatics, 2023 - Elsevier
Abstract Biomedical Entity Linking (BEL) is the task of mapping of spans of text within
biomedical documents to normalized, unique identifiers within an ontology. This is an …
biomedical documents to normalized, unique identifiers within an ontology. This is an …
Fine-tuning large language models for rare disease concept normalization
Objective We aim to develop a novel method for rare disease concept normalization by fine-
tuning Llama 2, an open-source large language model (LLM), using a domain-specific …
tuning Llama 2, an open-source large language model (LLM), using a domain-specific …
Chemical identification and indexing in PubMed full-text articles using deep learning and heuristics
The identification of chemicals in articles has attracted a large interest in the biomedical
scientific community, given its importance in drug development research. Most of previous …
scientific community, given its importance in drug development research. Most of previous …
Multi-language concept normalisation of clinical cohorts
JR Almeida, JL Oliveira - 2020 IEEE 33rd International …, 2020 - ieeexplore.ieee.org
The exploration of multiple cohorts allows researchers to answer new research questions
using more substantial clinical data. However, this is only possible if the cohorts are …
using more substantial clinical data. However, this is only possible if the cohorts are …
Leveraging Clinical Notes for Enhancing Decision-Making Systems with Relevant Patient Information
Personalised treatment is usually needed for hospitalised patients afflicted by secondary
illnesses that demand daily medication. Even though clinical guidelines were designed to …
illnesses that demand daily medication. Even though clinical guidelines were designed to …