Using routinely collected clinical data for circadian medicine: A review of opportunities and challenges

L Kervezee, HS Dashti, LK Pilz, C Skarke… - PLOS digital …, 2024 - journals.plos.org
A wealth of data is available from electronic health records (EHR) that are collected as part
of routine clinical care in hospitals worldwide. These rich, longitudinal data offer an attractive …

[HTML][HTML] Data provenance in biomedical research: scoping review

M Johns, T Meurers, FN Wirth, AC Haber… - Journal of Medical …, 2023 - jmir.org
Background Data provenance refers to the origin, processing, and movement of data.
Reliable and precise knowledge about data provenance has great potential to improve …

[HTML][HTML] Consolidated Reporting Guidelines for Prognostic and Diagnostic Machine Learning Models (CREMLS)

K El Emam, TI Leung, B Malin, W Klement… - Journal of Medical …, 2024 - jmir.org
The number of papers presenting machine learning (ML) models that are being submitted to
and published in the Journal of Medical Internet Research and other JMIR Publications …

Challenges and recommendations for Electronic Health Records data extraction and preparation for dynamic prediction modelling in hospitalized patients--a practical …

E Albu, S Gao, P Stijnen, FE Rademakers… - arXiv preprint arXiv …, 2025 - arxiv.org
Dynamic predictive modeling using electronic health record (EHR) data has gained
significant attention in recent years. The reliability and trustworthiness of such models …

From introducing Table 0 to forgetting Figure 1: it is time for a reporting guideline for publishing with real-world clinical data. Author's reply

JWTM de Kok, BCT van Bussel… - Journal of Clinical …, 2024 - jclinepi.com
References [1] de Kok JWTM, van Bussel BCT, Schnabel R, van Herpt TTW, Driessen RGH,
Meijs DAM, et al. Table 0; documenting the steps to go from clinical database to research …

[HTML][HTML] Understanding Pain in Polycystic Ovary Syndrome: Health Risks and Treatment Effectiveness

T Cherlin, S Mohammed, S Ottey, K Sherif… - medRxiv, 2024 - pmc.ncbi.nlm.nih.gov
Polycystic ovary syndrome (PCOS) is a prevalent endocrine disorder in women, often
accompanied by various symptoms including significant pain, such as dysmenorrhea …

lab: an R package for generating analysis-ready data from laboratory records

YJ Tseng, CJ Chen, CW Chang - PeerJ Computer Science, 2023 - peerj.com
Background Electronic health records (EHRs) play a crucial role in healthcare decision-
making by giving physicians insights into disease progression and suitable treatment …

[PDF][PDF] A Natural Language Processing Framework for Detecting Adverse Drug Reactions in Clinical Structured Drug Reviews

S Naderian, R Rahmani, T Samad-Soltani - Int J Drug Res Clin, 2024 - ijdrug.com
Abstract Background: Adverse drug reactions (ADRs) pose significant concerns in
healthcare, yet their underreporting remains a challenge. Extracting spontaneous and non …

P-Transformer: A Prompt-based Multimodal Transformer Architecture For Medical Tabular Data

Y Ruan, X Lan, DJ Tan, HR Abdullah… - arXiv preprint arXiv …, 2023 - arxiv.org
Medical tabular data, abundant in Electronic Health Records (EHRs), is a valuable resource
for diverse medical tasks such as risk prediction. While deep learning approaches …

[HTML][HTML] The evaluation of a clinical decision support tool using natural language processing to screen hospitalized adults for unhealthy substance use: protocol for a …

C Joyce, TW Markossian, J Nikolaides… - JMIR Research …, 2022 - researchprotocols.org
Background Automated and data-driven methods for screening using natural language
processing (NLP) and machine learning may replace resource-intensive manual …