Mass spectrometry‐based protein–protein interaction networks for the study of human diseases

AL Richards, M Eckhardt, NJ Krogan - Molecular systems biology, 2021 - embopress.org
A better understanding of the molecular mechanisms underlying disease is key for
expediting the development of novel therapeutic interventions. Disease mechanisms are …

[HTML][HTML] Interactome networks and human disease

M Vidal, ME Cusick, AL Barabási - Cell, 2011 - cell.com
Complex biological systems and cellular networks may underlie most genotype to
phenotype relationships. Here, we review basic concepts in network biology, discussing …

Global landscape of HIV–human protein complexes

S Jaeger, P Cimermancic, N Gulbahce, JR Johnson… - Nature, 2012 - nature.com
Human immunodeficiency virus (HIV) has a small genome and therefore relies heavily on
the host cellular machinery to replicate. Identifying which host proteins and complexes come …

SNX27 mediates retromer tubule entry and endosome-to-plasma membrane trafficking of signalling receptors

P Temkin, B Lauffer, S Jäger, P Cimermancic… - Nature cell …, 2011 - nature.com
Endocytic sorting of signalling receptors between recycling and degradative pathways is a
key cellular process controlling the surface complement of receptors and, accordingly, the …

Vif hijacks CBF-β to degrade APOBEC3G and promote HIV-1 infection

S Jäger, DY Kim, JF Hultquist, K Shindo, RS LaRue… - Nature, 2012 - nature.com
Restriction factors, such as the retroviral complementary DNA deaminase APOBEC3G, are
cellular proteins that dominantly block virus replication,,. The AIDS virus, human …

The dengue virus NS5 protein intrudes in the cellular spliceosome and modulates splicing

FA De Maio, G Risso, NG Iglesias, P Shah… - PLoS …, 2016 - journals.plos.org
Dengue virus NS5 protein plays multiple functions in the cytoplasm of infected cells,
enabling viral RNA replication and counteracting host antiviral responses. Here, we …

Affinity purification–mass spectrometry and network analysis to understand protein-protein interactions

JH Morris, GM Knudsen, E Verschueren, JR Johnson… - Nature protocols, 2014 - nature.com
By determining protein-protein interactions in normal, diseased and infected cells, we can
improve our understanding of cellular systems and their reaction to various perturbations. In …

Global mapping of herpesvirus-host protein complexes reveals a transcription strategy for late genes

ZH Davis, E Verschueren, GM Jang, K Kleffman… - Molecular cell, 2015 - cell.com
Mapping host-pathogen interactions has proven instrumental for understanding how viruses
manipulate host machinery and how numerous cellular processes are regulated. DNA …

Network-based methods for human disease gene prediction

X Wang, N Gulbahce, H Yu - Briefings in functional genomics, 2011 - academic.oup.com
Despite the considerable progress in disease gene discovery, we are far from uncovering
the underlying cellular mechanisms of diseases since complex traits, even many Mendelian …

Protein-protein interaction networks: probing disease mechanisms using model systems

U Kuzmanov, A Emili - Genome medicine, 2013 - Springer
Protein-protein interactions (PPIs) and multi-protein complexes perform central roles in the
cellular systems of all living organisms. In humans, disruptions of the normal patterns of PPIs …