A review of multiscale computational methods in polymeric materials

A Gooneie, S Schuschnigg, C Holzer - Polymers, 2017 - mdpi.com
Polymeric materials display distinguished characteristics which stem from the interplay of
phenomena at various length and time scales. Further development of polymer systems …

Modeling and simulations of polymers: a roadmap

TE Gartner III, A Jayaraman - Macromolecules, 2019 - ACS Publications
Molecular modeling and simulations are invaluable tools for the polymer science and
engineering community. These computational approaches enable predictions and provide …

Computer simulations of soft matter: Linking the scales

R Potestio, C Peter, K Kremer - Entropy, 2014 - mdpi.com
In the last few decades, computer simulations have become a fundamental tool in the field of
soft matter science, allowing researchers to investigate the properties of a large variety of …

[HTML][HTML] Molecular systems with open boundaries: Theory and simulation

L Delle Site, M Praprotnik - Physics Reports, 2017 - Elsevier
Typical experimental setups for molecular systems must deal with a certain coupling to the
external environment, that is, the system is open and exchanges mass, momentum, and …

Non-equilibrium modeling of concentration-driven processes with constant chemical potential molecular dynamics simulations

T Karmakar, AR Finney, M Salvalaglio… - Accounts of Chemical …, 2023 - ACS Publications
Conspectus Concentration-driven processes in solution, ie, phenomena that are sustained
by persistent concentration gradients, such as crystallization and surface adsorption, are …

[HTML][HTML] Adaptive resolution simulation of an atomistic protein in MARTINI water

J Zavadlav, MN Melo, SJ Marrink… - The Journal of chemical …, 2014 - pubs.aip.org
We present an adaptive resolution simulation of protein G in multiscale water. We couple
atomistic water around the protein with mesoscopic water, where four water molecules are …

Molecular dynamics simulations of solutions at constant chemical potential

C Perego, M Salvalaglio, M Parrinello - The Journal of chemical …, 2015 - pubs.aip.org
Molecular dynamics studies of chemical processes in solution are of great value in a wide
spectrum of applications, which range from nano-technology to pharmaceutical chemistry …

From adaptive resolution to molecular dynamics of open systems

R Cortes-Huerto, M Praprotnik, K Kremer… - The European Physical …, 2021 - Springer
We provide an overview of the Adaptive Resolution Simulation method (AdResS) based on
discussing its basic principles and presenting its current numerical and theoretical …

Adaptive resolution molecular dynamics technique: Down to the essential

C Krekeler, A Agarwal, C Junghans… - The Journal of …, 2018 - pubs.aip.org
We investigate the role of the thermodynamic (TD) force as an essential and sufficient
technical ingredient for an efficient and accurate adaptive resolution algorithm. Such a force …

Molecular dynamics in a grand ensemble: Bergmann–Lebowitz model and adaptive resolution simulation

A Agarwal, J Zhu, C Hartmann, H Wang… - New Journal of …, 2015 - iopscience.iop.org
This article deals with the molecular dynamics simulation of open systems that can
exchange energy and matter with a reservoir; the physics of the reservoir and its interactions …