Mediation effects of DNA methylation and hydroxymethylation on birth outcomes after prenatal per-and polyfluoroalkyl substances (PFAS) exposure in the Michigan …

RL Petroff, RG Cavalcante, ES Langen, DC Dolinoy… - Clinical …, 2023 - Springer
Background Per-and polyfluoroalkyl substances (PFAS) are chemicals that are resistant to
degradation and ubiquitous in our environments. PFAS may impact the developing …

Epigenetic modulators link mitochondrial redox homeostasis to cardiac function in a sex-dependent manner

Z ElBeck, MB Hossain, H Siga, N Oskolkov… - Nature …, 2024 - nature.com
While excessive production of reactive oxygen species (ROS) is a characteristic hallmark of
numerous diseases, clinical approaches that ameliorate oxidative stress have been …

[HTML][HTML] Increased isoform-specific phosphodiesterase 4D expression is associated with pathology and cognitive impairment in Alzheimer's disease

D Paes, R Lardenoije, RM Carollo, JAY Roubroeks… - Neurobiology of …, 2021 - Elsevier
Abstract Pharmacological phosphodiesterase 4D (PDE4D) inhibition shows therapeutic
potential to restore memory function in Alzheimer's disease (AD), but will likely evoke …

[HTML][HTML] Altered sphingolipid function in Alzheimer's disease; a gene regulatory network approach

C Giovagnoni, M Ali, LMT Eijssen, R Maes, K Choe… - Neurobiology of …, 2021 - Elsevier
Sphingolipids (SLs) are bioactive lipids involved in various important physiological
functions. The SL pathway has been shown to be affected in several brain-related disorders …

Arsenic exposure and human blood DNA methylation and hydroxymethylation profiles in two diverse populations from Bangladesh and Spain

A Domingo-Relloso, A Bozack, S Kiihl… - Environmental …, 2022 - Elsevier
Abstract Background Associations of arsenic (As) with the sum of 5-mC and 5-hmC levels
have been reported; however, As exposure-related differences of the separated 5-mC and 5 …

A Bayesian hierarchical model for improving measurement of 5mC and 5hmC levels: Toward revealing associations between phenotypes and methylation states

L Jiang, K Greenlaw, A Ciampi, AJ Canty… - Genetic …, 2022 - Wiley Online Library
hydroxymethylcytosine (5hmC) is a methylation state linked with gene regulation, commonly
found in cells of the central nervous system. 5hmC is associated with demethylation of …

Characterizing DNA methylation and hydroxymethylation in cord blood and identifying sex-specific differences using the Illumina EPIC array

RL Petroff, DC Dolinoy, V Padmanabhan… - Epigenetics …, 2024 - Taylor & Francis
ABSTRACT DNA methylation, an epigenetic mark, has become a common outcome in
epidemiological studies with the aid of affordable and reliable technologies. Yet the most …

Epigenome-wide profiling in the dorsal raphe nucleus highlights cell-type-specific changes in TNXB in Alzheimer's disease

RJM Riemens, E Pishva, A Iatrou, J Roubroeks, J Nolz… - bioRxiv, 2023 - biorxiv.org
Recent studies have demonstrated that the dorsal raphe nucleus (DRN) is among the first
brain regions affected in Alzheimer's disease. Hence, in this study we conducted the first …

The SEQC2 Epigenomics Quality Control (EpiQC) Study: comprehensive characterization of epigenetic methods, reproducibility, and quantification

J Foox, J Nordlund, C Lalancette, T Gong, M Lacey… - bioRxiv, 2020 - biorxiv.org
Cytosine modifications in DNA such as 5-methylcytosine (5mC) underlie a broad range of
developmental processes, maintain cellular lineage specification, and can define or stratify …

Bioinformatic estimation of DNA methylation and hydroxymethylation proportions

SF Kiihl - TET Proteins and DNA Demethylation: Methods and …, 2021 - Springer
Abstract Simultaneous measurement of 5-methylcytosine (5-mC) and 5-
hydroxymethylcytosine (5-hmC) at the single-nucleotide level can be obtained by combining …