[HTML][HTML] WormBase ParaSite− a comprehensive resource for helminth genomics

KL Howe, BJ Bolt, M Shafie, P Kersey… - Molecular and …, 2017 - Elsevier
The number of publicly available parasitic worm genome sequences has increased
dramatically in the past three years, and research interest in helminth functional genomics is …

The evolution of parasitism in Nematoda

M Blaxter, G Koutsovoulos - Parasitology, 2015 - cambridge.org
Nematodes are abundant and diverse, and include many parasitic species. Molecular
phylogenetic analyses have shown that parasitism of plants and animals has arisen at least …

Comparative genomics of the major parasitic worms

Nature genetics, 2019 - nature.com
Parasitic nematodes (roundworms) and platyhelminths (flatworms) cause debilitating
chronic infections of humans and animals, decimate crop production and are a major …

WormBase 2016: expanding to enable helminth genomic research

KL Howe, BJ Bolt, S Cain, J Chan, WJ Chen… - Nucleic acids …, 2016 - academic.oup.com
Abstract WormBase (www. wormbase. org) is a central repository for research data on the
biology, genetics and genomics of Caenorhabditis elegans and other nematodes. The …

Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots

S Kumar, M Jones, G Koutsovoulos, M Clarke… - Frontiers in …, 2013 - frontiersin.org
Generating the raw data for a de novo genome assembly project for a target eukaryotic
species is relatively easy. This democratization of access to large-scale data has allowed …

The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development

X Chen, JR Bracht, AD Goldman, E Dolzhenko… - Cell, 2014 - cell.com
Programmed DNA rearrangements in the single-celled eukaryote Oxytricha trifallax
completely rewire its germline into a somatic nucleus during development. This elaborate …

Programmed DNA elimination in the parasitic nematode Ascaris

B Estrem, J Wang - PLoS pathogens, 2023 - journals.plos.org
In most organisms, the whole genome is maintained throughout the life span. However,
exceptions occur in some species where the genome is reduced during development …

Programmed DNA elimination of germline development genes in songbirds

CM Kinsella, FJ Ruiz-Ruano, AM Dion-Côté… - Nature …, 2019 - nature.com
In some eukaryotes, germline and somatic genomes differ dramatically in their composition.
Here we characterise a major germline–soma dissimilarity caused by a germline-restricted …

Comparative genome analysis of programmed DNA elimination in nematodes

J Wang, S Gao, Y Mostovoy, Y Kang… - Genome …, 2017 - genome.cshlp.org
Programmed DNA elimination is a developmentally regulated process leading to the
reproducible loss of specific genomic sequences. DNA elimination occurs in unicellular …

WormBase 2014: new views of curated biology

TW Harris, J Baran, T Bieri, A Cabunoc… - Nucleic acids …, 2014 - academic.oup.com
Abstract WormBase (http://www. wormbase. org/) is a highly curated resource dedicated to
supporting research using the model organism Caenorhabditis elegans. With an electronic …