ASAP: assemble species by automatic partitioning

N Puillandre, S Brouillet, G Achaz - Molecular Ecology …, 2021 - Wiley Online Library
Abstract Here, we describe Assemble Species by Automatic Partitioning (ASAP), a new
method to build species partitions from single locus sequence alignments (ie, barcode data …

Gene flow creates a mirage of cryptic species in a Southeast Asian spotted stream frog complex

KO Chan, CR Hutter, PL Wood Jr, LL Grismer… - Molecular …, 2020 - Wiley Online Library
Most new cryptic species are described using conventional tree‐and distance‐based
species delimitation methods (SDMs), which rely on phylogenetic arrangements and …

Gene Flow Increases Phylogenetic Structure and Inflates Cryptic Species Estimations: A Case Study on Widespread Philippine Puddle Frogs (Occidozyga laevis)

KO Chan, CR Hutter, PL Wood Jr, YC Su… - Systematic …, 2022 - academic.oup.com
In cryptic amphibian complexes, there is a growing trend to equate high levels of genetic
structure with hidden cryptic species diversity. Typically, phylogenetic structure and distance …

One species hides many: Molecular and morphological evidence for cryptic speciation in a thread snake (Leptotyphlopidae: Leptotyphlops sylvicolus Broadley & …

T Busschau, W Conradie… - Journal of Zoological …, 2021 - Wiley Online Library
We investigate the phylogeographic structure of a fossorial forest‐living snake species, the
forest thread snake, Leptotyphlopssylvicolus Broadley & Wallach, 1997 by sampling …

Speciation Hypotheses from Phylogeographic Delimitation Yield an Integrative Taxonomy for Seal Salamanders (Desmognathus monticola)

RA Pyron, KA O'Connell, SC Duncan… - Systematic …, 2023 - academic.oup.com
Significant advances have been made in species delimitation and numerous methods can
test precisely defined models of speciation, though the synthesis of phylogeography and …

Widely used, short 16S rRNA mitochondrial gene fragments yield poor and erratic results in phylogenetic estimation and species delimitation of amphibians

KO Chan, ST Hertwig, DN Neokleous, JM Flury… - BMC Ecology and …, 2022 - Springer
Abstract Background The 16S mitochondrial rRNA gene is the most widely sequenced
molecular marker in amphibian systematic studies, making it comparable to the universal …

Large-scale phylogenetic analyses provide insights into unrecognized diversity and historical biogeography of Asian leaf-litter frogs, genus Leptolalax (Anura …

JM Chen, NA Poyarkov Jr, C Suwannapoom… - Molecular Phylogenetics …, 2018 - Elsevier
Abstract Southeast Asia and southern China (SEA-SC) harbor a highly diverse and endemic
flora and fauna that is under increasing threat. An understanding of the biogeographical …

Exploring large-scale patterns of genetic variation in the COI gene among Insecta: Implications for DNA barcoding and threshold-based species delimitation studies

H Zhang, W Bu - Insects, 2022 - mdpi.com
Simple Summary Insecta is the most diverse group in the kingdom Animalia, and it accounts
for approximately two-thirds of all animals. The most commonly used gene for species …

Unexpected but unsurprising lineage diversity within the most widespread Neotropical crocodilian genus Caiman (Crocodylia, Alligatoridae)

IJ Roberto, PS Bittencourt, FL Muniz… - Systematics and …, 2020 - Taylor & Francis
Species discovery methods utilizing coalescent-based approaches are powerful tools for
detecting cryptic lineages within morphological conservative groups, thus being an …

A DNA barcode library of Austrian geometridae (Lepidoptera) reveals high potential for DNA-based species identification

B Schattanek-Wiesmair, P Huemer, C Wieser, W Stark… - Plos one, 2024 - journals.plos.org
Situated in the Eastern section of the European Alps, Austria encompasses a great diversity
of different habitat types, ranging from alpine to lowland Pannonian ecosystems, and a …