High throughput sequencing for plant virus detection and discovery
Over the last decade, virologists have discovered an unprecedented number of viruses
using high throughput sequencing (HTS), which led to the advancement of our knowledge …
using high throughput sequencing (HTS), which led to the advancement of our knowledge …
VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs
Accurate detection of viruses in plants and animals is critical for agriculture production and
human health. Deep sequencing and assembly of virus-derived small interfering RNAs has …
human health. Deep sequencing and assembly of virus-derived small interfering RNAs has …
Exogenously applied dsRNA molecules deriving from the Zucchini yellow mosaic virus (ZYMV) genome move systemically and protect cucurbits against ZYMV
A Kaldis, M Berbati, O Melita, C Reppa… - Molecular plant …, 2018 - Wiley Online Library
Zucchini yellow mosaic virus (ZYMV) causes serious damage in a large number of cucurbits,
and control measures are necessary. Transgenic cucurbits expressing parts of the ZYMV …
and control measures are necessary. Transgenic cucurbits expressing parts of the ZYMV …
Towards the validation of high-throughput sequencing (HTS) for routine plant virus diagnostics: measurement of variation linked to HTS detection of citrus viruses and …
R Bester, G Cook, JHJ Breytenbach, C Steyn… - Virology Journal, 2021 - Springer
Background High-throughput sequencing (HTS) has been applied successfully for virus and
viroid discovery in many agricultural crops leading to the current drive to apply this …
viroid discovery in many agricultural crops leading to the current drive to apply this …
De Novo Reconstruction of Consensus Master Genomes of Plant RNA and DNA Viruses from siRNAs
Virus-infected plants accumulate abundant, 21–24 nucleotide viral siRNAs which are
generated by the evolutionary conserved RNA interference (RNAi) machinery that regulates …
generated by the evolutionary conserved RNA interference (RNAi) machinery that regulates …
The induction of an effective dsRNA-mediated resistance against tomato spotted wilt virus by exogenous application of double-stranded RNA largely depends on the …
Tomato spotted wilt virus (TSWV) is a devastating plant pathogen, causing huge crop losses
worldwide. Unfortunately, due to its wide host range and emergence of resistance breaking …
worldwide. Unfortunately, due to its wide host range and emergence of resistance breaking …
Field trial and molecular characterization of RNAi-transgenic tomato plants that exhibit resistance to tomato yellow leaf curl geminivirus
A Fuentes, N Carlos, Y Ruiz, D Callard… - Molecular Plant …, 2016 - Am Phytopath Society
RNA interference (RNAi) is a widely used approach to generate virus-resistant transgenic
crops. However, issues of agricultural importance like the long-term durability of RNAi …
crops. However, issues of agricultural importance like the long-term durability of RNAi …
Atypical molecular features of RNA silencing against the phloem-restricted polerovirus TuYV
M Clavel, E Lechner, M Incarbone… - Nucleic Acids …, 2021 - academic.oup.com
In plants and some animal lineages, RNA silencing is an efficient and adaptable defense
mechanism against viruses. To counter it, viruses encode suppressor proteins that interfere …
mechanism against viruses. To counter it, viruses encode suppressor proteins that interfere …
Deep sequencing of mycovirus‐derived small RNAs from Botrytis species
L Donaire, MA Ayllón - Molecular Plant Pathology, 2017 - Wiley Online Library
RNA silencing is an ancient regulatory mechanism operating in all eukaryotic cells. In fungi,
it was first discovered in Neurospora crassa, although its potential as a defence mechanism …
it was first discovered in Neurospora crassa, although its potential as a defence mechanism …
An internet-based bioinformatics toolkit for plant biosecurity diagnosis and surveillance of viruses and viroids
Background Detection and preventing entry of exotic viruses and viroids at the border is
critical for protecting plant industries trade worldwide. Existing post entry quarantine …
critical for protecting plant industries trade worldwide. Existing post entry quarantine …