[HTML][HTML] Rhizosphere microbiome: Engineering bacterial competitiveness for enhancing crop production

A Kumar, A Dubey - Journal of Advanced Research, 2020 - Elsevier
Plants in nature are constantly exposed to a variety of abiotic and biotic stresses which limits
their growth and production. Enhancing crop yield and production to feed exponentially …

Metabolomics and multi-omics integration: a survey of computational methods and resources

T Eicher, G Kinnebrew, A Patt, K Spencer, K Ying, Q Ma… - Metabolites, 2020 - mdpi.com
As researchers are increasingly able to collect data on a large scale from multiple clinical
and omics modalities, multi-omics integration is becoming a critical component of …

Transcriptional regulation of tocopherol biosynthesis in tomato

L Quadrana, J Almeida, SN Otaiza, T Duffy… - Plant Molecular …, 2013 - Springer
Tocopherols, compounds with vitamin E (VTE) activity, are potent lipid-soluble antioxidants
synthesized only by photosynthetic organisms. Their biosynthesis requires the condensation …

Engineering the plant rhizosphere

Y Zhang, C Ruyter-Spira, HJ Bouwmeester - Current opinion in …, 2015 - Elsevier
Highlights•The rhizosphere of plants has an important effect on plant performance.•
Signaling molecules produced by plants have a great impact on the rhizosphere.•Metabolic …

Genetic dissection of vitamin E biosynthesis in tomato

J Almeida, L Quadrana, R Asís, N Setta… - Journal of …, 2011 - academic.oup.com
Vegetables are critical for human health as they are a source of multiple vitamins including
vitamin E (VTE). In plants, the synthesis of VTE compounds, tocopherol and tocotrienol …

Recent trends and advancements for agro-environmental sustainability at higher altitudes

P Chaudhary, A Chaudhary, U Agri, H Khatoon… - Survival strategies in …, 2022 - Springer
Himalaya is one of the coldest environments on Earth and characterizes stressful conditions
due to lack of nutrients and freezing conditions. More refined and scientific farming is …

Predicting novel microRNA: a comprehensive comparison of machine learning approaches

G Stegmayer, LE Di Persia, M Rubiolo… - Briefings in …, 2019 - academic.oup.com
Motivation The importance of microRNAs (miRNAs) is widely recognized in the community
nowadays because these short segments of RNA can play several roles in almost all …

Plant networks as traits and hypotheses: moving beyond description

A Marshall-Colón, DJ Kliebenstein - Trends in Plant Science, 2019 - cell.com
Biology relies on the central thesis that the genes in an organism encode molecular
mechanisms that combine with stimuli and raw materials from the environment to create a …

High class-imbalance in pre-miRNA prediction: a novel approach based on deepSOM

G Stegmayer, C Yones, L Kamenetzky… - … /ACM transactions on …, 2016 - ieeexplore.ieee.org
The computational prediction of novel microRNA within a full genome involves identifying
sequences having the highest chance of being a miRNA precursor (pre-miRNA). These …

Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps

A Mortazavi, S Pepke, C Jansen, GK Marinov… - Genome …, 2013 - genome.cshlp.org
We tested whether self-organizing maps (SOMs) could be used to effectively integrate,
visualize, and mine diverse genomics data types, including complex chromatin signatures. A …