The evolution of gene expression in cis and trans

SA Signor, SV Nuzhdin - Trends in Genetics, 2018 - cell.com
There is abundant variation in gene expression between individuals, populations, and
species. The evolution of gene regulation and expression within and between species is …

[PDF][PDF] Intelligent model of ecosystem for smart cities using artificial neural networks

T Batool, S Abbas, Y Alhwaiti, M Saleem… - … Automation & Soft …, 2021 - researchgate.net
A Smart City understands the infrastructure, facilities, and schemes open to its citizens.
According to the UN report, at the end of 2050, more than half of the rural population will be …

Alternative splicing in seasonal plasticity and the potential for adaptation to environmental change

RA Steward, MA de Jong, V Oostra… - Nature …, 2022 - nature.com
Seasonal plasticity is accomplished via tightly regulated developmental cascades that
translate environmental cues into trait changes. Little is known about how alternative …

Cloudy with a chance of insights: context dependent gene regulation and implications for evolutionary studies

E Buchberger, M Reis, TH Lu, N Posnien - Genes, 2019 - mdpi.com
Research in various fields of evolutionary biology has shown that divergence in gene
expression is a key driver for phenotypic evolution. An exceptional contribution of cis …

[HTML][HTML] Cis and trans effects differentially contribute to the evolution of promoters and enhancers

K Mattioli, W Oliveros, C Gerhardinger, D Andergassen… - Genome biology, 2020 - Springer
Background Gene expression differences between species are driven by both cis and trans
effects. Whereas cis effects are caused by genetic variants located on the same DNA …

Comparative transcriptomics of 3 high-altitude passerine birds and their low-altitude relatives

Y Hao, Y Xiong, Y Cheng, G Song… - Proceedings of the …, 2019 - National Acad Sciences
High-altitude environments present strong stresses for living organisms, which have driven
striking phenotypic and genetic adaptations. While previous studies have revealed multiple …

Tissue-specific and cis-regulatory changes underlie parallel, adaptive gene expression evolution in house mice

SM Durkin, MA Ballinger, MW Nachman - Plos Genetics, 2024 - journals.plos.org
Changes in gene regulation have long been appreciated as a driving force of adaptive
evolution, however the relative contributions of cis-and trans-acting changes to gene …

Heritability of DNA methylation in threespine stickleback (Gasterosteus aculeatus)

J Hu, SJ Smith, TN Barry, HA Jamniczky, SM Rogers… - Genetics, 2021 - academic.oup.com
Epigenetic mechanisms underlying phenotypic change are hypothesized to contribute to
population persistence and adaptation in the face of environmental change. To date, few …

Unifying framework explaining how parental regulatory divergence can drive gene expression in hybrids and allopolyploids

K Janko, J Eisner, P Cigler, T Tichopád - Nature Communications, 2024 - nature.com
Hybridization and polyploidy are powerful evolutionary forces, inducing a range of
phenotypic outcomes, including non-additive expression, subgenome dominance …

Cis- and Trans-variations of Stearoyl-CoA Desaturase Provide New Insights into the Mechanisms of Diverged Pattern of Phenotypic Plasticity for Temperature …

C Wang, A Li, R Cong, H Qi, W Wang… - … Biology and Evolution, 2023 - academic.oup.com
The evolution of phenotypic plasticity plays an essential role in adaptive responses to
climate change; however, its regulatory mechanisms in marine organisms which exhibit high …