Exploring the costs of horizontal gene transfer

DA Baltrus - Trends in ecology & evolution, 2013 - cell.com
Horizontal gene transfer (HGT) is one of the most important evolutionary forces within
microbial populations. Although evidence for beneficial fitness effects of HGT is …

Transformation-associated recombination (TAR) cloning for genomics studies and synthetic biology

N Kouprina, V Larionov - Chromosoma, 2016 - Springer
Transformation-associated recombination (TAR) cloning represents a unique tool for
isolation and manipulation of large DNA molecules. The technique exploits a high level of …

An artificial chromosome for data storage

W Chen, M Han, J Zhou, Q Ge, P Wang… - National Science …, 2021 - academic.oup.com
DNA digital storage provides an alternative for information storage with high density and
long-term stability. Here, we report the de novo design and synthesis of an artificial …

Refinement of the diatom episome maintenance sequence and improvement of conjugation-based DNA delivery methods

RE Diner, VA Bielinski, CL Dupont, AE Allen… - … in bioengineering and …, 2016 - frontiersin.org
Conjugation of episomal plasmids from bacteria to diatoms advances diatom genetic
manipulation by simplifying transgene delivery and providing a stable and consistent gene …

Incompatibility and interchangeability in molecular evolution

DB Sloan, JM Warren, AM Williams… - Genome Biology and …, 2023 - academic.oup.com
There is remarkable variation in the rate at which genetic incompatibilities in molecular
interactions accumulate. In some cases, minor changes—even single-nucleotide …

Impact of donor–recipient phylogenetic distance on bacterial genome transplantation

F Labroussaa, A Lebaudy, V Baby… - Nucleic acids …, 2016 - academic.oup.com
Genome transplantation (GT) allows the installation of purified chromosomes into recipient
cells, causing the resulting organisms to adopt the genotype and the phenotype conferred …

Rapid construction of insulated genetic circuits via synthetic sequence-guided isothermal assembly

JP Torella, CR Boehm, F Lienert, JH Chen… - Nucleic acids …, 2014 - academic.oup.com
In vitro recombination methods have enabled one-step construction of large DNA
sequences from multiple parts. Although synthetic biological circuits can in principle be …

A supernumerary designer chromosome for modular in vivo pathway assembly in Saccharomyces cerevisiae

ED Postma, S Dashko, L van Breemen… - Nucleic acids …, 2021 - academic.oup.com
The construction of microbial cell factories for sustainable production of chemicals and
pharmaceuticals requires extensive genome engineering. Using Saccharomyces cerevisiae …

[PDF][PDF] Advances in yeast genome engineering

F David, V Siewers - FEMS Yeast Res, 2015 - Citeseer
Genome engineering based on homologous recombination has been applied to yeast for
many years. However, the growing importance of yeast as a cell factory in metabolic …

Programming biological operating systems: genome design, assembly and activation

DG Gibson - Nature methods, 2014 - nature.com
The DNA technologies developed over the past 20 years for reading and writing the genetic
code converged when the first synthetic cell was created 4 years ago. An outcome of this …