Genome folding through loop extrusion by SMC complexes

IF Davidson, JM Peters - Nature reviews Molecular cell biology, 2021 - nature.com
Genomic DNA is folded into loops and topologically associating domains (TADs), which
serve important structural and regulatory roles. It has been proposed that these genomic …

The molecular basis and disease relevance of non-homologous DNA end joining

B Zhao, E Rothenberg, DA Ramsden… - … Reviews Molecular Cell …, 2020 - nature.com
Non-homologous DNA end joining (NHEJ) is the predominant repair mechanism of any type
of DNA double-strand break (DSB) during most of the cell cycle and is essential for the …

[PDF][PDF] The energetics and physiological impact of cohesin extrusion

L Vian, A Pękowska, SSP Rao, KR Kieffer-Kwon… - Cell, 2018 - cell.com
Cohesin extrusion is thought to play a central role in establishing the architecture of
mammalian genomes. However, extrusion has not been visualized in vivo, and thus, its …

[PDF][PDF] Chromatin domains: the unit of chromosome organization

JR Dixon, DU Gorkin, B Ren - Molecular cell, 2016 - cell.com
How eukaryotic chromosomes fold inside the nucleus is an age-old question that remains
unanswered today. Early biochemical and microscopic studies revealed the existence of …

[PDF][PDF] The 3D genome as moderator of chromosomal communication

J Dekker, L Mirny - Cell, 2016 - cell.com
Proper expression of genes requires communication with their regulatory elements that can
be located elsewhere along the chromosome. The physics of chromatin fibers imposes a …

CTCF and cohesin regulate chromatin loop stability with distinct dynamics

AS Hansen, I Pustova, C Cattoglio, R Tjian, X Darzacq - elife, 2017 - elifesciences.org
Folding of mammalian genomes into spatial domains is critical for gene regulation. The
insulator protein CTCF and cohesin control domain location by folding domains into loop …

The role of chromatin loop extrusion in antibody diversification

Y Zhang, X Zhang, HQ Dai, H Hu, FW Alt - Nature Reviews Immunology, 2022 - nature.com
Cohesin mediates chromatin loop formation across the genome by extruding chromatin
between convergently oriented CTCF-binding elements. Recent studies indicate that …

[HTML][HTML] Insulated neighborhoods: structural and functional units of mammalian gene control

D Hnisz, DS Day, RA Young - Cell, 2016 - cell.com
Understanding how transcriptional enhancers control over 20,000 protein-coding genes to
maintain cell-type-specific gene expression programs in all human cells is a fundamental …

CTCF and cohesin in genome folding and transcriptional gene regulation

M Merkenschlager, EP Nora - Annual review of genomics and …, 2016 - annualreviews.org
Genome function, replication, integrity, and propagation rely on the dynamic structural
organization of chromosomes during the cell cycle. Genome folding in interphase provides …

Sensitization of drug resistant cancer cells: a matter of combination therapy

M Leary, S Heerboth, K Lapinska, S Sarkar - Cancers, 2018 - mdpi.com
Cancer drug resistance is an enormous problem. It is responsible for most relapses in
cancer patients following apparent remission after successful therapy. Understanding …