Small RNA-omics for plant virus identification, virome reconstruction, and antiviral defense characterization

MM Pooggin - Frontiers in microbiology, 2018 - frontiersin.org
RNA interference (RNAi)-based antiviral defense generates small interfering RNAs that
represent the entire genome sequences of both RNA and DNA viruses as well as viroids …

Current overview on viroid–host interactions

CR Adkar‐Purushothama… - Wiley Interdisciplinary …, 2020 - Wiley Online Library
Viroids are one of the most enigmatic highly structured, circular, single‐stranded RNA
phytopathogens. Although they are not known to code for any peptide, viroids induce visible …

Virus and viroid-derived small RNAs as modulators of host gene expression: molecular insights into pathogenesis

SV Ramesh, S Yogindran, P Gnanasekaran… - Frontiers in …, 2021 - frontiersin.org
Virus-derived siRNAs (vsiRNAs) generated by the host RNA silencing mechanism are
effectors of plant's defense response and act by targeting the viral RNA and DNA in post …

Silencing of transcription factor encoding gene StTCP23 by small RNAs derived from the virulence modulating region of potato spindle tuber viroid is associated with …

S Bao, RA Owens, Q Sun, H Song, Y Liu… - PLoS …, 2019 - journals.plos.org
Viroids are small, non-protein-coding RNAs which can induce disease symptoms in a variety
of plant species. Potato (Solanum tuberosum L.) is the natural host of Potato spindle tuber …

Next-generation sequencing and CRISPR/Cas13 editing in viroid research and molecular diagnostics

A Hadidi - Viruses, 2019 - mdpi.com
Viroid discovery as well as the economic significance of viroids and biological properties are
presented. Next-generation sequencing (NGS) technologies combined with informatics have …

RNA three-dimensional structure drives the sequence organization of potato spindle tuber viroid quasispecies

J Wu, Y Zhang, Y Nie, F Yan, CL Zirbel… - Plos …, 2024 - journals.plos.org
RNA viruses and viroids exist and evolve as quasispecies due to error-prone replication.
Quasispecies consist of a few dominant master sequences alongside numerous variants …

Citrus exocortis viroid causes ribosomal stress in tomato plants

P Cottilli, B Belda-Palazon… - Nucleic acids …, 2019 - academic.oup.com
Viroids are naked RNAs that do not code for any known protein and yet are able to infect
plants causing severe diseases. Because of their RNA nature, many studies have focused …

Revisiting the non-coding nature of pospiviroids

K Katsarou, CR Adkar-Purushothama, E Tassios… - Cells, 2022 - mdpi.com
Viroids are small, circular, highly structured pathogens that infect a broad range of plants,
causing economic losses. Since their discovery in the 1970s, they have been considered as …

Progress in 50 years of viroid research—Molecular structure, pathogenicity, and host adaptation

T Sano - Proceedings of the Japan Academy, Series B, 2021 - jstage.jst.go.jp
Viroids are non-encapsidated, single-stranded, circular RNAs consisting of 246–434
nucleotides. Despite their non-protein-encoding RNA nature, viroids replicate autonomously …

An inside look into biological miniatures: Molecular mechanisms of viroids

S Venkataraman, U Badar, E Shoeb, G Hashim… - International journal of …, 2021 - mdpi.com
Viroids are tiny single-stranded circular RNA pathogens that infect plants. Viroids do not
encode any proteins, yet cause an assortment of symptoms. The following review describes …