A decade of pig genome sequencing: a window on pig domestication and evolution

MAM Groenen - Genetics Selection Evolution, 2016 - Springer
Insight into how genomes change and adapt due to selection addresses key questions in
evolutionary biology and in domestication of animals and plants by humans. In that regard …

Genetics of adiposity in large animal models for human obesity—studies on pigs and dogs

M Stachowiak, I Szczerbal, M Switonski - Progress in molecular biology …, 2016 - Elsevier
The role of domestic mammals in the development of human biomedical sciences has been
widely documented. Among these model species the pig and dog are of special importance …

Genetic diversity and population structure of six autochthonous pig breeds from Croatia, Serbia, and Slovenia

M Zorc, D Škorput, K Gvozdanović, P Margeta… - Genetics selection …, 2022 - Springer
Background The importance of local breeds as genetic reservoirs of valuable genetic
variation is well established. Pig breeding in Central and South-Eastern Europe has a long …

The red deer Cervus elaphus genome CerEla1.0: sequencing, annotating, genes, and chromosomes

NÁ Bana, A Nyiri, J Nagy, K Frank, T Nagy… - Molecular Genetics and …, 2018 - Springer
We present here the de novo genome assembly CerEla1. 0 for the red deer, Cervus
elaphus, an emblematic member of the natural megafauna of the Northern Hemisphere …

Revisiting the Evolutionary History of Pigs via De Novo Mutation Rate Estimation in a Three-Generation Pedigree

M Zhang, Q Yang, H Ai, L Huang - Genomics, Proteomics & …, 2022 - academic.oup.com
The mutation rate used in the previous analyses of pig evolution and demographics was
cursory and hence invited potential bias in inferring evolutionary history. Herein, we …

Candidate gene screening for lipid deposition using combined transcriptomic and proteomic data from Nanyang black pigs

L Wang, Y Zhang, B Zhang, H Zhong, Y Lu, H Zhang - BMC genomics, 2021 - Springer
Background Lower selection intensities in indigenous breeds of Chinese pig have resulted
in obvious genetic and phenotypic divergence. One such breed, the Nanyang black pig, is …

Long‐read assembly of the Chinese indigenous Ningxiang pig genome and identification of genetic variations in fat metabolism among different breeds

H Ma, J Jiang, J He, H Liu, L Han… - Molecular ecology …, 2022 - Wiley Online Library
Advances in long‐read sequencing technology and genome assembly provide an
opportunity to improve the pig genome and reveal the full range of structural variations (SVs) …

A global analysis of CNVs in swine using whole genome sequence data and association analysis with fatty acid composition and growth traits

M Revilla, A Puig-Oliveras, A Castello… - PLoS …, 2017 - journals.plos.org
Copy number variations (CNVs) are important genetic variants complementary to SNPs, and
can be considered as biomarkers for some economically important traits in domestic …

Genome‐wide detection of copy number variants in European autochthonous and commercial pig breeds by whole‐genome sequencing of DNA pools identified …

S Bovo, A Ribani, M Munoz, E Alves, JP Araujo… - Animal …, 2020 - Wiley Online Library
In this study, we identified copy number variants (CNVs) in 19 European autochthonous pig
breeds and in two commercial breeds (Italian Large White and Italian Duroc) that represent …

Assessment of copy number variants in three Brazilian locally adapted cattle breeds using whole‐genome re‐sequencing data

E Peripolli, NB Stafuzza, MA Machado… - Animal …, 2023 - Wiley Online Library
Further characterization of genetic structural variations should strongly focus on small and
endangered local breeds given their role in unraveling genes and structural variants …