Data sharing in chemistry: lessons learned and a case for mandating structured reaction data

R Mercado, SM Kearnes, CW Coley - Journal of Chemical …, 2023 - ACS Publications
The past decade has seen a number of impressive developments in predictive chemistry
and reaction informatics driven by machine learning applications to computer-aided …

Virtual screening algorithms in drug discovery: A review focused on machine and deep learning methods

TA Oliveira, MP Silva, EHB Maia, AM Silva… - Drugs and Drug …, 2023 - mdpi.com
Drug discovery and repositioning are important processes for the pharmaceutical industry.
These processes demand a high investment in resources and are time-consuming. Several …

Investigating cardiotoxicity related with hERG channel blockers using molecular fingerprints and graph attention mechanism

T Wang, J Sun, Q Zhao - Computers in biology and medicine, 2023 - Elsevier
Human ether-a-go-go-related gene (hERG) channel blockade by small molecules is a big
concern during drug development in the pharmaceutical industry. Failure or inhibition of …

[图书][B] Statistical pattern recognition

AR Webb - 2003 - books.google.com
Statistical pattern recognition is a very active area of study andresearch, which has seen
many advances in recent years. New andemerging applications-such as data mining, web …

A perspective on explanations of molecular prediction models

GP Wellawatte, HA Gandhi, A Seshadri… - Journal of Chemical …, 2023 - ACS Publications
Chemists can be skeptical in using deep learning (DL) in decision making, due to the lack of
interpretability in “black-box” models. Explainable artificial intelligence (XAI) is a branch of …

A machine learning-based method to improve docking scoring functions and its application to drug repurposing

SL Kinnings, N Liu, PJ Tonge… - Journal of chemical …, 2011 - ACS Publications
Docking scoring functions are notoriously weak predictors of binding affinity. They typically
assign a common set of weights to the individual energy terms that contribute to the overall …

cardioToxCSM: A Web Server for Predicting Cardiotoxicity of Small Molecules

S Iftkhar, AGC de Sá, JPL Velloso, R Aljarf… - Journal of Chemical …, 2022 - ACS Publications
The design of novel, safe, and effective drugs to treat human diseases is a challenging
venture, with toxicity being one of the main sources of attrition at later stages of …

From black boxes to actionable insights: a perspective on explainable artificial intelligence for scientific discovery

Z Wu, J Chen, Y Li, Y Deng, H Zhao… - Journal of Chemical …, 2023 - ACS Publications
The application of Explainable Artificial Intelligence (XAI) in the field of chemistry has
garnered growing interest for its potential to justify the prediction of black-box machine …

Machine learning-based virtual screening for STAT3 anticancer drug target

A Wadood, A Ajmal, M Junaid… - Current …, 2022 - ingentaconnect.com
Background: Signal transducers and activators of the transcription (STAT) family is
composed of seven structurally similar and highly conserved members, including STAT1 …

Prediction of lysine ubiquitination with mRMR feature selection and analysis

Y Cai, T Huang, L Hu, X Shi, L Xie, Y Li - Amino acids, 2012 - Springer
Ubiquitination, one of the most important post-translational modifications of proteins, occurs
when ubiquitin (a small 76-amino acid protein) is attached to lysine on a target protein. It …