Optogenetics for light control of biological systems

V Emiliani, E Entcheva, R Hedrich… - Nature Reviews …, 2022 - nature.com
Optogenetic techniques have been developed to allow control over the activity of selected
cells within a highly heterogeneous tissue, using a combination of genetic engineering and …

Single-cell sequencing of brain cell transcriptomes and epigenomes

EJ Armand, J Li, F Xie, C Luo, EA Mukamel - Neuron, 2021 - cell.com
Single-cell sequencing technologies, including transcriptomic and epigenomic assays, are
transforming our understanding of the cellular building blocks of neural circuits. By directly …

Comprehensive analysis of single cell ATAC-seq data with SnapATAC

R Fang, S Preissl, Y Li, X Hou, J Lucero, X Wang… - Nature …, 2021 - nature.com
Identification of the cis-regulatory elements controlling cell-type specific gene expression
patterns is essential for understanding the origin of cellular diversity. Conventional assays to …

A human cell atlas of fetal chromatin accessibility

S Domcke, AJ Hill, RM Daza, J Cao, DR O'Day… - Science, 2020 - science.org
INTRODUCTION In recent years, the single-cell genomics field has made incredible
progress toward disentangling the cellular heterogeneity of human tissues. However, the …

Development and arealization of the cerebral cortex

CR Cadwell, A Bhaduri, MA Mostajo-Radji, MG Keefe… - Neuron, 2019 - cell.com
Adult cortical areas consist of specialized cell types and circuits that support unique higher-
order cognitive functions. How this regional diversity develops from an initially uniform …

An atlas of gene regulatory elements in adult mouse cerebrum

YE Li, S Preissl, X Hou, Z Zhang, K Zhang, Y Qiu… - Nature, 2021 - nature.com
The mammalian cerebrum performs high-level sensory perception, motor control and
cognitive functions through highly specialized cortical and subcortical structures. Recent …

Regional, layer, and cell-type-specific connectivity of the mouse default mode network

JD Whitesell, A Liska, L Coletta, KE Hirokawa, P Bohn… - Neuron, 2021 - cell.com
The evolutionarily conserved default mode network (DMN) is a distributed set of brain
regions coactivated during resting states that is vulnerable to brain disorders. How disease …

[HTML][HTML] Functional enhancer elements drive subclass-selective expression from mouse to primate neocortex

JK Mich, LT Graybuck, EE Hess, JT Mahoney, Y Kojima… - Cell reports, 2021 - cell.com
Viral genetic tools that target specific brain cell types could transform basic neuroscience
and targeted gene therapy. Here, we use comparative open chromatin analysis to identify …

A scalable platform for the development of cell-type-specific viral drivers

S Hrvatin, CP Tzeng, MA Nagy, H Stroud… - Elife, 2019 - elifesciences.org
Enhancers are the primary DNA regulatory elements that confer cell type specificity of gene
expression. Recent studies characterizing individual enhancers have revealed their …

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian… - BioRxiv, 2020 - biorxiv.org
The primary motor cortex (M1) is essential for voluntary fine motor control and is functionally
conserved across mammals. Using high-throughput transcriptomic and epigenomic profiling …