Histone acetylation dynamics in repair of DNA double-strand breaks

S Aricthota, PP Rana, D Haldar - Frontiers in Genetics, 2022 - frontiersin.org
Packaging of eukaryotic genome into chromatin is a major obstacle to cells encountering
DNA damage caused by external or internal agents. For maintaining genomic integrity, the …

Transcriptional regulation at DSBs: mechanisms and consequences

FE Machour, N Ayoub - Trends in Genetics, 2020 - cell.com
Defective double-strand break (DSB) repair leads to genomic instabilities that may augment
carcinogenesis. DSBs trigger transient transcriptional silencing in the vicinity of …

Transcription and DNA damage: holding hands or crossing swords?

G D'Alessandro, FA di Fagagna - Journal of molecular biology, 2017 - Elsevier
Transcription has classically been considered a potential threat to genome integrity.
Collision between transcription and DNA replication machinery, and retention of DNA: RNA …

Neurospora crassa: Looking back and looking forward at a model microbe

CM Roche, JJ Loros, K McCluskey… - American journal of …, 2014 - Wiley Online Library
Investigation of the red bread mold that contaminated French bakeries nearly two centuries
ago has led to a wealth of discoveries that have impacted our understanding of genetic …

Chromatin signatures at Notch‐regulated enhancers reveal large‐scale changes in H3K56ac upon activation

L Skalska, R Stojnic, J Li, B Fischer… - The EMBO …, 2015 - embopress.org
The conserved Notch pathway functions in diverse developmental and disease‐related
processes, requiring mechanisms to ensure appropriate target selection and gene activation …

Remodeling of perturbed chromatin can initiate de novo transcriptional and post-transcriptional silencing

F Carlier, S Castro Ramirez, J Kilani… - Proceedings of the …, 2024 - pnas.org
In eukaryotes, repetitive DNA can become silenced de novo, either transcriptionally or post-
transcriptionally, by processes independent of strong sequence-specific cues. The …

Histone-modifying enzymes, histone modifications and histone chaperones in nucleosome assembly: Lessons learned from Rtt109 histone acetyltransferases

JL Dahlin, X Chen, MA Walters… - Critical reviews in …, 2015 - Taylor & Francis
During DNA replication, nucleosomes ahead of replication forks are disassembled to
accommodate replication machinery. Following DNA replication, nucleosomes are then …

RNA interference in fungi: retention and loss

FE Nicolás, V Garre - The Fungal Kingdom, 2017 - Wiley Online Library
RNA interference (RNAi) is a mechanism conserved in eukaryotes that represses gene
expression by means of small noncoding RNAs (sRNAs) of about 20 to 30 nucleotides (nt) …

Mechanism of siRNA production from repetitive DNA

Q Yang, QA Ye, Y Liu - Genes & development, 2015 - genesdev.cshlp.org
RNAi is a conserved genome defense mechanism in eukaryotes that protects against
deleterious effects of transposons and viral invasion. Repetitive DNA loci are a major source …

Role of the histone acetyltransferase Rtt109 in development and pathogenicity of the rice blast fungus

S Kwon, J Lee, J Jeon, S Kim, SY Park… - Molecular Plant …, 2018 - Am Phytopath Society
Acetylation of histone H3 lysine 56 (H3K56) by the fungal-specific histone acetyltransferase
Rtt109 plays important roles in maintaining genome integrity and surviving DNA damage …