Plant organelle RNA editing and its specificity factors: enhancements of analyses and new database features in PREPACT 3.0

H Lenz, A Hein, V Knoop - BMC bioinformatics, 2018 - Springer
Background Gene expression in plant chloroplasts and mitochondria is affected by RNA
editing. Numerous C-to-U conversions, accompanied by reverse U-to-C exchanges in some …

The complete chloroplast genome of Onobrychis gaubae (Fabaceae-Papilionoideae): comparative analysis with related IR-lacking clade species

M Moghaddam, A Ohta, M Shimizu, R Terauchi… - BMC Plant …, 2022 - Springer
Abstract Background Plastome (Plastid genome) sequences provide valuable markers for
surveying evolutionary relationships and population genetics of plant species …

Comprehensive analysis of complete chloroplast genome and phylogenetic aspects of ten Ficus species

Y Huang, J Li, Z Yang, W An, C Xie, S Liu, X Zheng - BMC plant biology, 2022 - Springer
Abstract Background The large genus Ficus comprises approximately 800 species, most of
which possess high ornamental and ecological values. However, its evolutionary history …

Neotropical palms: from their conservation to economic potential

KKM Martins, SA Vianna, AF Francisconi… - Frontiers in Plant …, 2024 - frontiersin.org
Palms (Arecaceae) are an important group of plants widely distributed throughout the world.
The Arecaceae family comprises a great diversity of species, however, many of them are …

Genomic exploration of Sesuvium sesuvioides: comparative study and phylogenetic analysis within the order Caryophyllales from Cholistan desert, Pakistan

N Javaid, M Ramzan, S Jabeen, MN Shah, S Danish… - BMC Plant …, 2023 - Springer
Abstract Background The Aizoaceae family's Sesuvium sesuvioides (Fenzl) Verdc is a
medicinal species of the Cholistan desert, Pakistan. The purpose of this study was to …

Complete chloroplast genome sequence of Betula platyphylla: gene organization, RNA editing, and comparative and phylogenetic analyses

S Wang, C Yang, X Zhao, S Chen, GZ Qu - BMC genomics, 2018 - Springer
Background Betula platyphylla is a common tree species in northern China that has high
economic and medicinal value. Our laboratory has been devoted to genome research on B …

The amount of RNA editing sites in liverwort organellar genes is correlated with GC content and nuclear PPR protein diversity

S Dong, C Zhao, S Zhang, H Wu, W Mu… - Genome Biology and …, 2019 - academic.oup.com
RNA editing occurs in the organellar mRNAs of all land plants but the marchantioid
liverworts, making liverworts a perfect group for studying the evolution of RNA editing. Here …

Comparative Plastid Genomics of Neotropical Bulbophyllum (Orchidaceae; Epidendroideae)

M Zavala-Páez, LN Vieira, VA Baura… - Frontiers in Plant …, 2020 - frontiersin.org
Pantropical Bulbophyllum, with∼ 2,200 species, is one of the largest genera in
Orchidaceae. Although phylogenetics and taxonomy of the∼ 60 American species in the …

The complete plastome of macaw palm [Acrocomia aculeata (Jacq.) Lodd. ex Mart.] and extensive molecular analyses of the evolution of plastid genes in Arecaceae

A de Santana Lopes, T Gomes Pacheco, T Nimz… - Planta, 2018 - Springer
Main conclusion The plastome of macaw palm was sequenced allowing analyses of
evolution and molecular markers. Additionally, we demonstrated that more than half of …

Comparative genomic study on the complete plastomes of four officinal Ardisia species in China

C Xie, W An, S Liu, Y Huang, Z Yang, J Lin, X Zheng - Scientific Reports, 2021 - nature.com
Abstract Ardisia Sw.(Primulaceae) is naturally distributed in tropical and subtropical areas.
Most of them possess edible and medicinal values and are popular in clinical and daily use …