Heterogeneity of triple negative breast cancer: Current advances in subtyping and treatment implications

K Asleh, N Riaz, TO Nielsen - Journal of Experimental & Clinical Cancer …, 2022 - Springer
As the field of translational 'omics has progressed, refined classifiers at both genomic and
proteomic levels have emerged to decipher the heterogeneity of breast cancer in a clinically …

Tumor evolution: Linear, branching, neutral or punctuated?

A Davis, R Gao, N Navin - Biochimica et Biophysica Acta (BBA)-Reviews …, 2017 - Elsevier
Intratumor heterogeneity has been widely reported in human cancers, but our knowledge of
how this genetic diversity emerges over time remains limited. A central challenge in studying …

Landscape of somatic mutations in 560 breast cancer whole-genome sequences

S Nik-Zainal, H Davies, J Staaf, M Ramakrishna… - Nature, 2016 - nature.com
We analysed whole-genome sequences of 560 breast cancers to advance understanding of
the driver mutations conferring clonal advantage and the mutational processes generating …

Chromothripsis followed by circular recombination drives oncogene amplification in human cancer

C Rosswog, C Bartenhagen, A Welte, Y Kahlert… - Nature …, 2021 - nature.com
The mechanisms behind the evolution of complex genomic amplifications in cancer have
remained largely unclear. Using whole-genome sequencing data of the pediatric tumor …

[HTML][HTML] ERα-associated translocations underlie oncogene amplifications in breast cancer

JJK Lee, YL Jung, TC Cheong, J Espejo Valle-Inclan… - Nature, 2023 - nature.com
Focal copy-number amplification is an oncogenic event. Although recent studies have
revealed the complex structure,–and the evolutionary trajectories of oncogene amplicons …

Punctuated copy number evolution and clonal stasis in triple-negative breast cancer

R Gao, A Davis, TO McDonald, E Sei, X Shi, Y Wang… - Nature …, 2016 - nature.com
Aneuploidy is a hallmark of breast cancer; however, knowledge of how these complex
genomic rearrangements evolve during tumorigenesis is limited. In this study, we developed …

Clonal evolution in breast cancer revealed by single nucleus genome sequencing

Y Wang, J Waters, ML Leung, A Unruh, W Roh, X Shi… - Nature, 2014 - nature.com
Sequencing studies of breast tumour cohorts have identified many prevalent mutations, but
provide limited insight into the genomic diversity within tumours. Here we developed a …

[HTML][HTML] Breast cancer molecular stratification: from intrinsic subtypes to integrative clusters

HG Russnes, OC Lingjærde, AL Børresen-Dale… - The American journal of …, 2017 - Elsevier
Breast carcinomas can be stratified into different entities based on clinical behavior,
histologic features, and/or by biological properties. A classification of breast cancer should …

The first five years of single-cell cancer genomics and beyond

NE Navin - Genome research, 2015 - genome.cshlp.org
Single-cell sequencing (SCS) is a powerful new tool for investigating evolution and diversity
in cancer and understanding the role of rare cells in tumor progression. These methods …

Tumour evolution inferred by single-cell sequencing

N Navin, J Kendall, J Troge, P Andrews, L Rodgers… - Nature, 2011 - nature.com
Genomic analysis provides insights into the role of copy number variation in disease, but
most methods are not designed to resolve mixed populations of cells. In tumours, where …