Neural natural language processing for unstructured data in electronic health records: a review

I Li, J Pan, J Goldwasser, N Verma, WP Wong… - Computer Science …, 2022 - Elsevier
Electronic health records (EHRs), digital collections of patient healthcare events and
observations, are ubiquitous in medicine and critical to healthcare delivery, operations, and …

[HTML][HTML] Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review

Y Si, J Du, Z Li, X Jiang, T Miller, F Wang… - Journal of biomedical …, 2021 - Elsevier
Objectives Patient representation learning refers to learning a dense mathematical
representation of a patient that encodes meaningful information from Electronic Health …

Combining structured and unstructured data for predictive models: a deep learning approach

D Zhang, C Yin, J Zeng, X Yuan, P Zhang - BMC medical informatics and …, 2020 - Springer
Background The broad adoption of electronic health records (EHRs) provides great
opportunities to conduct health care research and solve various clinical problems in …

Deep learning in clinical natural language processing: a methodical review

S Wu, K Roberts, S Datta, J Du, Z Ji, Y Si… - Journal of the …, 2020 - academic.oup.com
Objective This article methodically reviews the literature on deep learning (DL) for natural
language processing (NLP) in the clinical domain, providing quantitative analysis to answer …

Towards faithful model explanation in nlp: A survey

Q Lyu, M Apidianaki, C Callison-Burch - Computational Linguistics, 2024 - direct.mit.edu
End-to-end neural Natural Language Processing (NLP) models are notoriously difficult to
understand. This has given rise to numerous efforts towards model explainability in recent …

Use of unstructured text in prognostic clinical prediction models: a systematic review

TM Seinen, EA Fridgeirsson, S Ioannou… - Journal of the …, 2022 - academic.oup.com
Objective This systematic review aims to assess how information from unstructured text is
used to develop and validate clinical prognostic prediction models. We summarize the …

[HTML][HTML] SECNLP: A survey of embeddings in clinical natural language processing

KS Kalyan, S Sangeetha - Journal of biomedical informatics, 2020 - Elsevier
Distributed vector representations or embeddings map variable length text to dense fixed
length vectors as well as capture prior knowledge which can transferred to downstream …

Faithful explanations of black-box nlp models using llm-generated counterfactuals

Y Gat, N Calderon, A Feder, A Chapanin… - arXiv preprint arXiv …, 2023 - arxiv.org
Causal explanations of the predictions of NLP systems are essential to ensure safety and
establish trust. Yet, existing methods often fall short of explaining model predictions …

Representation learning for clinical time series prediction tasks in electronic health records

T Ruan, L Lei, Y Zhou, J Zhai, L Zhang, P He… - BMC medical informatics …, 2019 - Springer
Abstract Background Electronic health records (EHRs) provide possibilities to improve
patient care and facilitate clinical research. However, there are many challenges faced by …

[HTML][HTML] Deep patient representation of clinical notes via multi-task learning for mortality prediction

Y Si, K Roberts - AMIA Summits on Translational Science …, 2019 - ncbi.nlm.nih.gov
We propose a deep learning-based multi-task learning (MTL) architecture focusing on
patient mortality predictions from clinical notes. The MTL framework enables the model to …