Molecular dynamics simulation of membrane systems in the context of traumatic brain injury

ATN Vo, MA Murphy, PK Phan, TW Stone… - Current Opinion in …, 2023 - Elsevier
Traumatic brain injury (TBI), caused by physical insults to the head, involves complex
pathophysiological processes that damage the brain at multiple length scales. Unlike …

Coarse-grained modeling of pore dynamics on the red blood cell membrane under large deformations

M Razizadeh, M Nikfar, R Paul, Y Liu - Biophysical Journal, 2020 - cell.com
Transient pore formation on the membrane of red blood cells (RBCs) under high mechanical
tensions is of great importance in many biomedical applications, such as RBC damage …

Coarse-grained molecular simulation of extracellular vesicle squeezing for drug loading

K Islam, M Razizadeh, Y Liu - Physical Chemistry Chemical Physics, 2023 - pubs.rsc.org
In recent years, extracellular vesicles have become promising carriers as next-generation
drug delivery platforms. Effective loading of exogenous cargos without compromising the …

Unraveling the molecular mechanisms of membrane rupture: Insights from all-atom simulations and theoretical modeling

P Zhu, J Lin, Y Fu, C Shen, H Zhou, S Qu… - Journal of the Mechanics …, 2025 - Elsevier
Cell membrane rupture occurs universally and is long thought to be the terminal event of cell
death; however, there is an inadequate understanding of the microscopic mechanisms of …

Impact of prior axonal injury on subsequent injury during brain tissue stretching–A mesoscale computational approach

A Bakhtiarydavijani, TW Stone - Journal of the Mechanical Behavior of …, 2024 - Elsevier
Epidemiology studies of traumatic brain injury (TBI) show individuals with a prior history of
TBI experience an increased risk of future TBI with a significantly more detrimental outcome …

A mesoscale finite element modeling approach for understanding brain morphology and material heterogeneity effects in chronic traumatic encephalopathy

A Bakhtiarydavijani, G Khalid, MA Murphy… - Computer Methods in …, 2021 - Taylor & Francis
Abstract Chronic Traumatic Encephalopathy (CTE) affects a significant portion of athletes in
contact sports but is difficult to quantify using clinical examinations and modeling …

Molecular dynamics simulations of phospholipid bilayer mechanoporation under different strain states—a comparison between GROMACS and LAMMPS

ATN Vo, MA Murphy, TW Stone, PK Phan… - … and Simulation in …, 2021 - iopscience.iop.org
Nanoscale deformation mechanisms of cellular structures could render drastically different
results depending on the molecular dynamics (MD) simulator chosen. Due to different …

A biphasic viscoelastic constitutive model for brain tissue

M Hosseini Farid… - ASME …, 2019 - asmedigitalcollection.asme.org
In this study, a rate-dependent biphasic model will be introduced to account for
phenomenological behavior of brain tissue. For this purpose, a poro-hyper viscoelastic …

Supra Coarse-Grained Modeling of Biological Membranes

M Razizadeh - 2021 - search.proquest.com
In this dissertation, we present our work on utilizing molecular dynamics (MD) simulations at
various scales to understand the pore formation process on the red blood cell (RBC) …

[图书][B] Molecular dynamics simulations of phospholipid bilayers under deformation–a comparison between GROMACS and LAMMPS

ATN Vo - 2020 - search.proquest.com
Abstract Model of nanoscale deformation mechanisms of cellular structures could render
different results depending on the molecular dynamics (MD) simulator chosen. Also, the …