Promoter-proximal pausing of RNA polymerase II: a nexus of gene regulation

L Core, K Adelman - Genes & development, 2019 - genesdev.cshlp.org
Precise spatio–temporal control of gene activity is essential for organismal development,
growth, and survival in a changing environment. Decisive steps in gene regulation involve …

Causes and consequences of RNA polymerase II stalling during transcript elongation

M Noe Gonzalez, D Blears, JQ Svejstrup - Nature reviews Molecular …, 2021 - nature.com
The journey of RNA polymerase II (Pol II) as it transcribes a gene is anything but a smooth
ride. Transcript elongation is discontinuous and can be perturbed by intrinsic regulatory …

Structure of paused transcription complex Pol II–DSIF–NELF

SM Vos, L Farnung, H Urlaub, P Cramer - Nature, 2018 - nature.com
Metazoan gene regulation often involves the pausing of RNA polymerase II (Pol II) in the
promoter-proximal region. Paused Pol II is stabilized by the protein complexes DRB …

[HTML][HTML] Structure and mechanism of the RNA polymerase II transcription machinery

AC Schier, DJ Taatjes - Genes & development, 2020 - genesdev.cshlp.org
Abstract RNA polymerase II (Pol II) transcribes all protein-coding genes and many
noncoding RNAs in eukaryotic genomes. Although Pol II is a complex, 12-subunit enzyme, it …

Mammalian NET-seq reveals genome-wide nascent transcription coupled to RNA processing

T Nojima, T Gomes, ARF Grosso, H Kimura, MJ Dye… - Cell, 2015 - cell.com
Transcription is a highly dynamic process. Consequently, we have developed native
elongating transcript sequencing technology for mammalian chromatin (mNET-seq), which …

Nascent RNA analyses: tracking transcription and its regulation

EM Wissink, A Vihervaara, ND Tippens… - Nature Reviews …, 2019 - nature.com
The programmes that direct an organism's development and maintenance are encoded in its
genome. Decoding of this information begins with regulated transcription of genomic DNA …

RNA polymerase II elongation control

Q Zhou, T Li, DH Price - Annual review of biochemistry, 2012 - annualreviews.org
Regulation of the elongation phase of transcription by RNA polymerase II (Pol II) is utilized
extensively to generate the pattern of mRNAs needed to specify cell types and to respond to …

Nucleosomes are context-specific, H2A. Z-modulated barriers to RNA polymerase

CM Weber, S Ramachandran, S Henikoff - Molecular cell, 2014 - cell.com
Nucleosomes are barriers to transcription in vitro; however, their effects on RNA polymerase
in vivo are unknown. Here we describe a simple and general strategy to comprehensively …

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

S Bonn, RP Zinzen, C Girardot, EH Gustafson… - Nature …, 2012 - nature.com
Chromatin modifications are associated with many aspects of gene expression, yet their role
in cellular transitions during development remains elusive. Here, we use a new approach to …

Control of transcriptional elongation

H Kwak, JT Lis - Annual review of genetics, 2013 - annualreviews.org
Elongation is becoming increasingly recognized as a critical step in eukaryotic
transcriptional regulation. Although traditional genetic and biochemical studies have …