Comparing environmental metabarcoding and trawling survey of demersal fish communities in the Gulf of St. Lawrence, Canada

SF Afzali, H Bourdages, M Laporte, C Mérot… - Environmental …, 2021 - Wiley Online Library
Biodiversity assessment is an important part of conservation management that ideally can
be accomplished with noninvasive methods without influencing the structure and functioning …

VESPA: an optimized protocol for accurate metabarcoding-based characterization of vertebrate eukaryotic endosymbiont and parasite assemblages

LA Owens, S Friant, B Martorelli Di Genova… - Nature …, 2024 - nature.com
Protocols for characterizing taxonomic assemblages by deep sequencing of short DNA
barcode regions (metabarcoding) have revolutionized our understanding of microbial …

Characterizing parasitic nematode faunas in faeces and soil using DNA metabarcoding

ML Davey, KS Utaaker, F Fossøy - Parasites & Vectors, 2021 - Springer
Background Gastrointestinal parasitic nematodes can impact fecundity, development,
behaviour, and survival in wild vertebrate populations. Conventional monitoring of …

Response mechanism of meiofaunal communities to multi-type of artificial reef habitats from the perspective of high-throughput sequencing technology

M Song, J Wang, Y Wang, R Hu, L Wang, Z Guo… - Science of The Total …, 2023 - Elsevier
Multiple types of artificial reefs have been widely deployed in the coast of northern Yellow
Sea, which can enhance fishery resources, restore coastal habitats and improve the marine …

[HTML][HTML] What makes a better indicator? Taxonomic vs functional response of nematodes to estuarine gradient

K Sroczyńska, P Chainho, S Vieira, H Adao - Ecological Indicators, 2021 - Elsevier
Efficient implementation of nematodes-based indices for ecological quality assessment
requires fundamental knowledge on their biodiversity and functional patterns along with the …

[HTML][HTML] Environmental DNA metabarcoding of intertidal meiofauna sheds light on its potential for habitat discovery

M Wang, T Yergaliyev, C Sun, JG Martinez, B Wang - Ecological Indicators, 2023 - Elsevier
Benthic meiofauna is a fundamental component of food webs and nutrient exchange of
marine ecosystems. However, its diversity pattern and ecology of intertidal meiofauna …

High-throughput sequencing and conventional morphotyping show different soil nematode assemblages but similar community responses to altitudinal gradients on …

Y Kitagami, K Obase, Y Matsuda - Pedobiologia, 2022 - Elsevier
The progress of molecular techniques has provided opportunities to comprehensively
understand the assemblage patterns of nematode communities in various natural …

Nematode biodiversity assessments need vouchered databases: A BOLD reference library for plant-parasitic nematodes in the superfamily Criconematoidea

TO Powers, TS Harris, RS Higgins, PG Mullin… - …, 2021 - cdnsciencepub.com
Nematodes are frequently cited as underrepresented in faunistic surveys using DNA
barcoding with COI. This underrepresentation is generally attributed to a limited presence of …

Optimization of 18 S rRNA metabarcoding for the simultaneous diagnosis of intestinal parasites

D Kang, JH Choi, M Kim, S Yun, S Oh, M Yi, TS Yong… - Scientific reports, 2024 - nature.com
Recent advancements in next-generation sequencing (NGS) technologies have created
new opportunities for comprehensive screening of multiple parasite species. In this study …

Sensitive and accurate DNA metabarcoding of parasitic helminth mock communities using the mitochondrial rRNA genes

AHE Chan, N Saralamba, S Saralamba… - Scientific Reports, 2022 - nature.com
Next-generation sequencing technologies have accelerated the pace of helminth DNA
metabarcoding research, enabling species detection in bulk community samples. However …