Moving through the Stressed Genome: Emerging Regulatory Roles for Transposons in Plant Stress Response

P Negi, AN Rai, P Suprasanna - Frontiers in plant science, 2016 - frontiersin.org
The recognition of a positive correlation between organism genome size with its
transposable element (TE) content, represents a key discovery of the field of genome …

Retrotransposons in plant genomes: structure, identification, and classification through bioinformatics and machine learning

S Orozco-Arias, G Isaza, R Guyot - International journal of molecular …, 2019 - mdpi.com
Transposable elements (TEs) are genomic units able to move within the genome of virtually
all organisms. Due to their natural repetitive numbers and their high structural diversity, the …

LTR retrotransposons, handy hitchhikers of plant regulation and stress response

MA Grandbastien - Biochimica et Biophysica Acta (BBA)-Gene Regulatory …, 2015 - Elsevier
LTR retrotransposons are major components of plant genomes. They are regulated by a
diverse array of external stresses and tissue culture conditions, displaying finely tuned …

The LORE1 insertion mutant resource

A Małolepszy, T Mun, N Sandal, V Gupta… - The Plant …, 2016 - Wiley Online Library
Long terminal repeat (LTR) retrotransposons are closely related to retroviruses, and their
activities shape eukaryotic genomes. Here, we present a complete Lotus japonicus insertion …

Genome‐wide LORE1 retrotransposon mutagenesis and high‐throughput insertion detection in Lotus japonicus

DF Urbański, A Małolepszy, J Stougaard… - The Plant …, 2012 - Wiley Online Library
Use of insertion mutants facilitates functional analysis of genes, but it has been difficult to
identify a suitable mutagen and to establish large populations for reverse genetics in most …

Rearrangement of Actin Cytoskeleton Mediates Invasion of Lotus japonicus Roots by Mesorhizobium loti

K Yokota, E Fukai, LH Madsen, A Jurkiewicz… - The Plant …, 2009 - academic.oup.com
Infection thread–dependent invasion of legume roots by rhizobia leads to internalization of
bacteria into the plant cells, which is one of the salient features of root nodule symbiosis. We …

Establishment of a Lotus japonicus gene tagging population using the exon‐targeting endogenous retrotransposon LORE1

E Fukai, T Soyano, Y Umehara, S Nakayama… - The Plant …, 2012 - Wiley Online Library
We established a gene tagging population of the model legume Lotus japonicus using an
endogenous long terminal repeat (LTR) retrotransposon Lotus Retrotransposon 1 (LORE1) …

Dissection of Symbiosis and Organ Development by Integrated Transcriptome Analysis of Lotus japonicus Mutant and Wild-Type Plants

N Høgslund, S Radutoiu, L Krusell, V Voroshilova… - PLoS …, 2009 - journals.plos.org
Genetic analyses of plant symbiotic mutants has led to the identification of key genes
involved in Rhizobium-legume communication as well as in development and function of …

A Medicago truncatula Tobacco Retrotransposon Insertion Mutant Collection with Defects in Nodule Development and Symbiotic Nitrogen Fixation

CI Pislariu, J D. Murray, JQ Wen, V Cosson… - Plant …, 2012 - academic.oup.com
A Tnt1-insertion mutant population of Medicago truncatula ecotype R108 was screened for
defects in nodulation and symbiotic nitrogen fixation. Primary screening of 9,300 mutant …

The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus

Y Kawaharada, EK James, S Kelly… - Molecular plant …, 2017 - Am Phytopath Society
Several hundred genes are transcriptionally regulated during infection-thread formation and
development of nitrogen-fixing root nodules. We have characterized a set of Lotus japonicus …