DNA transposons and the evolution of eukaryotic genomes

C Feschotte, EJ Pritham - Annu. Rev. Genet., 2007 - annualreviews.org
Transposable elements are mobile genetic units that exhibit broad diversity in their structure
and transposition mechanisms. Transposable elements occupy a large fraction of many …

Active transposition in genomes

CRL Huang, KH Burns, JD Boeke - Annual review of genetics, 2012 - annualreviews.org
Transposons are DNA sequences capable of moving in genomes. Early evidence showed
their accumulation in many species and suggested their continued activity in at least isolated …

Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression

JD Hollister, BS Gaut - Genome research, 2009 - genome.cshlp.org
Transposable elements (TEs) are ubiquitous genomic parasites. The deleterious
consequences of the presence and activity of TEs have fueled debate about the evolutionary …

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

K Naito, F Zhang, T Tsukiyama, H Saito, CN Hancock… - Nature, 2009 - nature.com
High-copy-number transposable elements comprise the majority of eukaryotic genomes
where they are major contributors to gene and genome evolution. However, it remains …

Transposase-assisted target-site integration for efficient plant genome engineering

P Liu, K Panda, SA Edwards, R Swanson, H Yi… - Nature, 2024 - nature.com
The current technologies to place new DNA into specific locations in plant genomes are low
frequency and error-prone, and this inefficiency hampers genome-editing approaches to …

Plant transposable elements: biology and evolution

E Kejnovsky, JS Hawkins, C Feschotte - Plant Genome Diversity Volume 1 …, 2012 - Springer
Beginning with the pioneering work in the 30s and 40s of Barbara McClintock, RA Brink,
Rollins Emerson, Marcus Rhoades, and other prominent maize geneticists, transposable …

Kicking against the PRCs–a domesticated transposase antagonises silencing mediated by Polycomb group proteins and is an accessory component of Polycomb …

SC Liang, B Hartwig, P Perera, S Mora-García… - PLoS …, 2015 - journals.plos.org
The Polycomb group (PcG) and trithorax group (trxG) genes play crucial roles in
development by regulating expression of homeotic and other genes controlling cell fate …

Miniature inverted-repeat transposable elements: discovery, distribution, and activity

I Fattash, R Rooke, A Wong, C Hui, T Luu… - …, 2013 - cdnsciencepub.com
Eukaryotic organisms have dynamic genomes, with transposable elements (TEs) as a major
contributing factor. Although the large autonomous TEs can significantly shape genomic …

Recent reactivation of a pathogenicity-associated transposable element is associated with major chromosomal rearrangements in a fungal wheat pathogen

T Badet, SM Tralamazza, A Feurtey… - Nucleic Acids …, 2024 - academic.oup.com
Transposable elements (TEs) are key drivers of genomic variation contributing to recent
adaptation in most species. Yet, the evolutionary origins and insertion dynamics within …

Loss of function mutations in the rice chromomethylase Os CMT 3a cause a burst of transposition

C Cheng, Y Tarutani, A Miyao, T Ito… - The Plant …, 2015 - Wiley Online Library
Methylation patterns of plants are unique as, in addition to the methylation at CG
dinucleotides that occurs in mammals, methylation also occurs at non‐CG sites. Genes are …